Bra008552 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra008552 T018799_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NGA4
M06707_2.00 		Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN		 Dap-seq
OMalley et al.(2016)
NGA4_col_a 		0.821 0.821
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008552.1-P B3 35 132

Links

Other B3 family TFs
Other Brassica rapa TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.880
NGA4 Arabidopsis thaliana AT4G01500 D 0.821
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.705
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.835
Bo00853s090 Brassica oleracea Bo00853s090 I 0.968
Bo9g004050 Brassica oleracea Bo9g004050 N 0.707
Bra037417 Brassica rapa Bra037417 N 0.753
Cagra.23502s0003 Capsella grandiflora Cagra.23502s0003 I 0.779
Carubv10001406m.g Capsella rubella Carubv10001406m.g I 0.779
Thhalv10028783m.g Eutrema salsugineum Thhalv10028783m.g I 0.842
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.743
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.714
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.730
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.700