Pavir.Fb00027 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Fb00027 T023855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDEF1
M09774_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$IDEF1_Q2 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00027.1.p B3 252 353
Pavir.Fb00027.2.p B3 251 352
Pavir.Fb00027.3.p B3 252 352

Links

Other B3 family TFs
Other Panicum virgatum TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_28679 Aegilops tauschii F775_28679 I 0.866
BRADI3G12910 Brachypodium distachyon BRADI3G12910 I 0.811
BRADI5G26100 Brachypodium distachyon BRADI5G26100 N 0.742
MLOC_37086 Hordeum vulgare MLOC_37086 I 0.885
LPERR08G00120 Leersia perrieri LPERR08G00120 I 0.851
OBART08G00060 Oryza barthii OBART08G00060 I 0.811
OB08G10110 Oryza brachyantha OB08G10110 I 0.781
OGLUM08G00080 Oryza glumaepatula OGLUM08G00080 I 0.811
BGIOSGA027821 Oryza indica BGIOSGA027821 I 0.812
OLONG_014444 Oryza longistaminata OLONG_014444 I 0.811
ONIVA08G00050 Oryza nivara ONIVA08G00050 I 0.812
ORUFI08G00070 Oryza rufipogon ORUFI08G00070 I 0.811
IDEF1 Oryza sativa OS08G0101000 D 0.811
Pavir.Fa02368 Panicum virgatum Pavir.Fa02368 I 1.000
Si015586m.g Setaria italica Si015586m.g I 0.907
Sb07g000220 Sorghum bicolor Sb07g000220 I 0.866
Traes_7AL_C0DB55E98 Triticum aestivum Traes_7AL_C0DB55E98 I 0.845
Traes_7BL_6183FA9D4 Triticum aestivum Traes_7BL_6183FA9D4 I 0.866
TRIUR3_27457 Triticum urartu TRIUR3_27457 I 0.866
GRMZM2G405699 Zea mays GRMZM2G405699 I 0.771
GRMZM2G125596 Zea mays GRMZM2G125596 I 0.866