Bo3g149640 (Brassica oleracea)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bo3g149640 T024530_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.872 0.872
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.872 0.872
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g149640.1 BBR 1 47

Links

Other BBR family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g04870 Acanthocheilonema viteae nAv.1.0.1.g04870 N
ANCDUO_06311 Ancylostoma duodenale ANCDUO_06311 N
ACAC_0000490701 Angiostrongylus cantonensis ACAC_0000490701 N
ACOC_0001036301 Angiostrongylus costaricensis ACOC_0001036301 N
ASIM_0001284101 Anisakis simplex ASIM_0001284101 N
ASU_05009 Ascaris suum ASU_05009 N
Bm10163 Brugia malayi Bm10163 N
Bm7640 Brugia malayi Bm7640 N
BXY_0855500 Bursaphelenchus xylophilus BXY_0855500 N
DICVIV_09532 Dictyocaulus viviparus DICVIV_09532 N
EEL_0000412901 Elaeophora elaphi EEL_0000412901 N
EVEC_0001166801 Enterobius vermicularis EVEC_0001166801 N
HCOI00637900 Haemonchus contortus HCOI00637900 N
HPLM_0001532901 Haemonchus placei HPLM_0001532901 N
HPBE_0001810001 Heligmosomoides bakeri HPBE_0001810001 N
Hba_21527 Heterorhabditis bacteriophora Hba_21527 N
nLs.2.1.2.g03103 Litomosoides sigmodontis nLs.2.1.2.g03103 N
LOAG_03092 Loa loa LOAG_03092 N
MhA1_Contig354.frz3.gene60 Meloidogyne hapla MhA1_Contig354.frz3.gene60 N
Minc03019 Meloidogyne incognita Minc03019 N
NECAME_03333 Necator americanus NECAME_03333 N
nOo.2.0.1.g00722 Onchocerca ochengi nOo.2.0.1.g00722 N
WBGene00239750 Onchocerca volvulus WBGene00239750 N
scaffold1322-EXSNAP2012.4 Pristionchus exspectatus scaffold1322-EXSNAP2012.4 N
RSKR_0001108600 Rhabditophanes kr3021 RSKR_0001108600 N
L596_g9224 Steinernema carpocapsae L596_g9224 N
L889_g25145 Steinernema feltiae L889_g25145 N
L898_g34810 Steinernema monticolum L898_g34810 N
L892_g9710 Steinernema scapterisci L892_g9710 N
SPAL_0000744000 Strongyloides papillosus SPAL_0000744000 N
SSTP_0001191000 Strongyloides stercoralis SSTP_0001191000 N
SVE_1021200 Strongyloides venezuelensis SVE_1021200 N
SMUV_0000944701 Syphacia muris SMUV_0000944701 N
TCLT_0000625901 Thelazia callipaeda TCLT_0000625901 N
TCNE_0001573901 Toxocara canis TCNE_0001573901 N
WUBG_04888 Wuchereria bancrofti WUBG_04888 N