POPTR_0123s00230 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0123s00230 T027413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0123s00230.1 BED ZF 56 100

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I
Aquca_027_00052 Aquilegia coerulea Aquca_027_00052 I
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I
NAP Arabidopsis lyrata fgenesh2_kg.2__1206__AT1G69490.1 I
ATNAC2 Arabidopsis lyrata fgenesh2_kg.3__1698__AT3G15510.1 I
NAC029 Arabidopsis thaliana AT1G69490 D
NAC056 Arabidopsis thaliana AT3G15510 I
Bostr.28625s0148 Boechera stricta Bostr.28625s0148 I
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I
Bo5g127030 Brassica oleracea Bo5g127030 I
Bo6g095510 Brassica oleracea Bo6g095510 I
Bo6g108930 Brassica oleracea Bo6g108930 I
Bra027237 Brassica rapa Bra027237 I
Bra004385 Brassica rapa Bra004385 I
PK25119.1 Cannabis sativa PK25119.1 I
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I
Carubv10014008m.g Capsella rubella Carubv10014008m.g I
Carubv10020776m.g Capsella rubella Carubv10020776m.g I
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I
Ca_16379 Cicer arietinum Ca_16379 I
Ca_18090 Cicer arietinum Ca_18090 I
Cla010367 Citrullus lanatus Cla010367 I
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I
Cucsa.284890 Cucumis sativus Cucsa.284890 I
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I
Thhalv10022353m.g Eutrema salsugineum Thhalv10022353m.g I
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I
GLYMA20G04400 Glycine max GLYMA20G04400 I
GLYMA13G35560 Glycine max GLYMA13G35560 I
GLYMA07G35630 Glycine max GLYMA07G35630 I
GLYMA02G12220 Glycine max GLYMA02G12220 I
GLYMA01G06150 Glycine max GLYMA01G06150 I
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I
Lus10026617.g Linum usitatissimum Lus10026617.g I
Lus10037156.g Linum usitatissimum Lus10037156.g I
Lus10036773.g Linum usitatissimum Lus10036773.g I
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I
MDP0000180683 Malus domestica MDP0000180683 I
MDP0000481448 Malus domestica MDP0000481448 I
MDP0000404409 Malus domestica MDP0000404409 I
MDP0000262990 Malus domestica MDP0000262990 I
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I
MTR_5g041940 Medicago truncatula MTR_5g041940 I
MTR_4g089135 Medicago truncatula MTR_4g089135 I
MTR_4g081870 Medicago truncatula MTR_4g081870 I
mgf016848m Mimulus guttatus mgf016848m I
mgf022118m Mimulus guttatus mgf022118m I
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I
OBART11G01590 Oryza barthii OBART11G01590 I
OBART12G01290 Oryza barthii OBART12G01290 I
OB11G11210 Oryza brachyantha OB11G11210 I
OB12G11500 Oryza brachyantha OB12G11500 I
ORGLA12G0011400 Oryza glaberrima ORGLA12G0011400 I
OGLUM12G01870 Oryza glumaepatula OGLUM12G01870 I
OGLUM11G01310 Oryza glumaepatula OGLUM11G01310 I
BGIOSGA034713 Oryza indica BGIOSGA034713 I
BGIOSGA036920 Oryza indica BGIOSGA036920 I
BGIOSGA036918 Oryza indica BGIOSGA036918 I
OLONG_020632 Oryza longistaminata OLONG_020632 I
OLONG_026749 Oryza longistaminata OLONG_026749 I
OMERI12G00480 Oryza meridionalis OMERI12G00480 I
ONIVA11G01630 Oryza nivara ONIVA11G01630 I
OPUNC11G01330 Oryza punctata OPUNC11G01330 I
OPUNC12G01370 Oryza punctata OPUNC12G01370 I
ORUFI12G01570 Oryza rufipogon ORUFI12G01570 I
OS11G0126900 Oryza sativa OS11G0126900 I
OS12G0123700 Oryza sativa OS12G0123700 I
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I
Pm006470 Prunus mume Pm006470 I
Pm025312 Prunus mume Pm025312 I
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I
29813.m001519 Ricinus communis 29813.m001519 I
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I
Sb05g001580 Sorghum bicolor Sb05g001580 I
TCM_011671 Theobroma cacao TCM_011671 I
VIT_19s0014g03300 Vitis vinifera VIT_19s0014g03300 I
NAP Vitis vinifera VIT_01s0026g02710 I