CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene04769-v1.0-hybrid
(
Fragaria vesca
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
gene04769-v1.0-hybrid
T028276_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna04769.1-v1.0-hybrid
BED ZF
26
86
DVGWEYGALVNLSNLDKVKCKLCGKVLSGGIYRLKQHIAHIKGTVASCNMSSDEDKNKCLC
Links
Other
BED ZF
family TFs
Other
Fragaria vesca
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10026863m.g
Eutrema salsugineum
Thhalv10026863m.g
N
0.714
gene23491-v1.0-hybrid
Fragaria vesca
gene23491-v1.0-hybrid
N
0.762
gene24597-v1.0-hybrid
Fragaria vesca
gene24597-v1.0-hybrid
N
0.854
MDP0000207354
Malus domestica
MDP0000207354
N
0.780
MDP0000282741
Malus domestica
MDP0000282741
N
0.714
MDP0000750292
Malus domestica
MDP0000750292
N
0.780
Sb04g008820
Sorghum bicolor
Sb04g008820
N
0.714
Sb04g017410
Sorghum bicolor
Sb04g017410
N
0.762
Sb07g014876
Sorghum bicolor
Sb07g014876
N
0.714