Bo1g011740 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo1g011740 T031067_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.914 1.000
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.914 0.957
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.885 0.617
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.872 0.617
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.872 0.617
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.872 0.617
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.872 0.617
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.872 0.617
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.872 0.617
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.858 0.660
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.845 0.638
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.845 0.638
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.845 0.638
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.845 0.638
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.845 0.638
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g011740.1 bHLH 151 198

Links

Other bHLH family TFs
Other Brassica oleracea TFs

673 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11081 Aegilops tauschii F775_11081 I
F775_23174 Aegilops tauschii F775_23174 I
F775_42361 Aegilops tauschii F775_42361 I
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I
AMTR_s00099p00131560 Amborella trichopoda AMTR_s00099p00131560 I
Aquca_014_00032 Aquilegia coerulea Aquca_014_00032 I
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I
ANAC070 Arabidopsis lyrata Al_scaffold_0006_3164 I
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I
ANAC015 Arabidopsis lyrata fgenesh2_kg.1__3458__AT1G33280.1 I
SMB Arabidopsis lyrata scaffold_202942.1 I
NAC012 Arabidopsis thaliana AT1G32770 D
BRN1 Arabidopsis thaliana AT1G33280 I
SMB Arabidopsis thaliana AT1G79580 D
BRN2 Arabidopsis thaliana AT4G10350 D
Bostr.20129s0396 Boechera stricta Bostr.20129s0396 I
Bostr.25463s0283 Boechera stricta Bostr.25463s0283 I
Bostr.3359s0042 Boechera stricta Bostr.3359s0042 I
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I
BRADI5G11247 Brachypodium distachyon BRADI5G11247 I
Bo2g095440 Brassica oleracea Bo2g095440 I
Bo5g049360 Brassica oleracea Bo5g049360 I
Bo5g086900 Brassica oleracea Bo5g086900 I
Bo6g080930 Brassica oleracea Bo6g080930 I
Bo6g123980 Brassica oleracea Bo6g123980 I
Bo9g088300 Brassica oleracea Bo9g088300 I
Bra000709 Brassica rapa Bra000709 I
Bra003602 Brassica rapa Bra003602 I
Bra008423 Brassica rapa Bra008423 I
Bra010183 Brassica rapa Bra010183 I
Bra023288 Brassica rapa Bra023288 I
Bra035127 Brassica rapa Bra035127 I
Bra037914 Brassica rapa Bra037914 I
PK10271.1 Cannabis sativa PK10271.1 I
PK22182.1 Cannabis sativa PK22182.1 I
Cagra.12686s0005 Capsella grandiflora Cagra.12686s0005 I
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I
Cagra.1725s0032 Capsella grandiflora Cagra.1725s0032 I
Cagra.6133s0030 Capsella grandiflora Cagra.6133s0030 I
Carubv10003879m.g Capsella rubella Carubv10003879m.g I
Carubv10010920m.g Capsella rubella Carubv10010920m.g I
Carubv10011900m.g Capsella rubella Carubv10011900m.g I
Carubv10020504m.g Capsella rubella Carubv10020504m.g I
evm.TU.supercontig_118.26 Carica papaya evm.TU.supercontig_118.26 I
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I
Ca_13929 Cicer arietinum Ca_13929 I
Ca_15792 Cicer arietinum Ca_15792 I
Cla005561 Citrullus lanatus Cla005561 I
Cla006806 Citrullus lanatus Cla006806 I
Cla011508 Citrullus lanatus Cla011508 I
Cla012576 Citrullus lanatus Cla012576 I
Ciclev10006623m.g Citrus clementina Ciclev10006623m.g I
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I
Ciclev10024035m.g Citrus clementina Ciclev10024035m.g I
Ciclev10024588m.g Citrus clementina Ciclev10024588m.g I
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I
orange1.1g015853m.g Citrus sinensis orange1.1g015853m.g I
orange1.1g042376m.g Citrus sinensis orange1.1g042376m.g I
orange1.1g046523m.g Citrus sinensis orange1.1g046523m.g I
Cucsa.120870 Cucumis sativus Cucsa.120870 I
Cucsa.193460 Cucumis sativus Cucsa.193460 I
Cucsa.237820 Cucumis sativus Cucsa.237820 I
Cucsa.240210 Cucumis sativus Cucsa.240210 I
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I
Eucgr.F04097 Eucalyptus grandis Eucgr.F04097 I
Thhalv10008226m.g Eutrema salsugineum Thhalv10008226m.g I
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I
Thhalv10019534m.g Eutrema salsugineum Thhalv10019534m.g I
Thhalv10029403m.g Eutrema salsugineum Thhalv10029403m.g I
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I
gene19898-v1.0-hybrid Fragaria vesca gene19898-v1.0-hybrid I
gene31175-v1.0-hybrid Fragaria vesca gene31175-v1.0-hybrid I
GLYMA08G17140 Glycine max GLYMA08G17140 I
GLYMA09G36820 Glycine max GLYMA09G36820 I
GLYMA12G00540 Glycine max GLYMA12G00540 I
GLYMA15G42050 Glycine max GLYMA15G42050 I
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I
Gorai.004G267300 Gossypium raimondii Gorai.004G267300 I
Gorai.004G268500 Gossypium raimondii Gorai.004G268500 I
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I
MLOC_17128 Hordeum vulgare MLOC_17128 I
MLOC_19175 Hordeum vulgare MLOC_19175 I
MLOC_66924 Hordeum vulgare MLOC_66924 I
LPERR02G09170 Leersia perrieri LPERR02G09170 I
LPERR06G01790 Leersia perrieri LPERR06G01790 I
LPERR06G14120 Leersia perrieri LPERR06G14120 I
LPERR08G01440 Leersia perrieri LPERR08G01440 I
Lus10001664.g Linum usitatissimum Lus10001664.g I
Lus10002687.g Linum usitatissimum Lus10002687.g I
Lus10008271.g Linum usitatissimum Lus10008271.g I
Lus10009939.g Linum usitatissimum Lus10009939.g I
Lus10013782.g Linum usitatissimum Lus10013782.g I
Lus10017340.g Linum usitatissimum Lus10017340.g I
Lus10030143.g Linum usitatissimum Lus10030143.g I
Lus10030205.g Linum usitatissimum Lus10030205.g I
Lus10033239.g Linum usitatissimum Lus10033239.g I
Lus10039153.g Linum usitatissimum Lus10039153.g I
LjSGA_059487.1 Lotus japonicus LjSGA_059487.1 I
MDP0000140229 Malus domestica MDP0000140229 I
MDP0000257674 Malus domestica MDP0000257674 I
MDP0000460430 Malus domestica MDP0000460430 I
MDP0000501518 Malus domestica MDP0000501518 I
MDP0000558493 Malus domestica MDP0000558493 I
MDP0000652584 Malus domestica MDP0000652584 I
MDP0000762302 Malus domestica MDP0000762302 D
cassava32649.m1 Manihot esculenta cassava32649.m1 I
cassava32687.m1 Manihot esculenta cassava32687.m1 I
cassava33021.m1 Manihot esculenta cassava33021.m1 I
cassava39971.m1 Manihot esculenta cassava39971.m1 I
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I
cassava45846.m1 Manihot esculenta cassava45846.m1 I
cassava4621.m1 Manihot esculenta cassava4621.m1 I
MTR_2g062730 Medicago truncatula MTR_2g062730 I
MTR_4g035590 Medicago truncatula MTR_4g035590 I
mg017416m Mimulus guttatus mg017416m I
mgf017656m Mimulus guttatus mgf017656m I
mgf022455m Mimulus guttatus mgf022455m I
mgf025569m Mimulus guttatus mgf025569m I
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I
GSMUA_Achr2G05640_001 Musa acuminata GSMUA_Achr2G05640_001 I
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I
GSMUA_Achr6G28890_001 Musa acuminata GSMUA_Achr6G28890_001 I
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I
OBART02G10820 Oryza barthii OBART02G10820 I
OBART04G13830 Oryza barthii OBART04G13830 I
OBART06G01950 Oryza barthii OBART06G01950 I
OBART06G17120 Oryza barthii OBART06G17120 I
OBART08G01110 Oryza barthii OBART08G01110 I
OB02G19660 Oryza brachyantha OB02G19660 I
OB04G21050 Oryza brachyantha OB04G21050 I
OB06G11970 Oryza brachyantha OB06G11970 I
OB06G24850 Oryza brachyantha OB06G24850 I
OB08G11290 Oryza brachyantha OB08G11290 I
ORGLA02G0097800 Oryza glaberrima ORGLA02G0097800 I
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I
OGLUM02G10770 Oryza glumaepatula OGLUM02G10770 I
OGLUM04G13590 Oryza glumaepatula OGLUM04G13590 I
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I
OGLUM06G18230 Oryza glumaepatula OGLUM06G18230 I
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I
BGIOSGA007898 Oryza indica BGIOSGA007898 I
BGIOSGA015018 Oryza indica BGIOSGA015018 I
BGIOSGA021116 Oryza indica BGIOSGA021116 I
BGIOSGA022006 Oryza indica BGIOSGA022006 I
BGIOSGA027883 Oryza indica BGIOSGA027883 I
BGIOSGA034998 Oryza indica BGIOSGA034998 I
OLONG_007664 Oryza longistaminata OLONG_007664 I
OLONG_020428 Oryza longistaminata OLONG_020428 I
OMERI06G01850 Oryza meridionalis OMERI06G01850 I
OMERI06G17980 Oryza meridionalis OMERI06G17980 I
ONIVA02G12010 Oryza nivara ONIVA02G12010 I
ONIVA04G12040 Oryza nivara ONIVA04G12040 I
ONIVA06G02290 Oryza nivara ONIVA06G02290 I
ONIVA06G20460 Oryza nivara ONIVA06G20460 I
ONIVA08G01130 Oryza nivara ONIVA08G01130 I
OPUNC02G09610 Oryza punctata OPUNC02G09610 I
OPUNC06G01800 Oryza punctata OPUNC06G01800 I
OPUNC06G15490 Oryza punctata OPUNC06G15490 I
OPUNC08G01110 Oryza punctata OPUNC08G01110 I
ORUFI02G10740 Oryza rufipogon ORUFI02G10740 I
ORUFI04G15090 Oryza rufipogon ORUFI04G15090 I
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I
ORUFI06G18140 Oryza rufipogon ORUFI06G18140 I
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I
OS02G0252200 Oryza sativa OS02G0252200 I
OS06G0131700 Oryza sativa OS06G0131700 D
OS06G0530400 Oryza sativa OS06G0530400 I
OS08G0115800 Oryza sativa OS08G0115800 I
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I
Pavir.Gb01599 Panicum virgatum Pavir.Gb01599 I
Pavir.J05053 Panicum virgatum Pavir.J05053 I
Pavir.J07268 Panicum virgatum Pavir.J07268 I
Pavir.J07835 Panicum virgatum Pavir.J07835 I
Pavir.J20698 Panicum virgatum Pavir.J20698 I
Pavir.J21162 Panicum virgatum Pavir.J21162 I
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I
POPTR_0008s07950 Populus trichocarpa POPTR_0008s07950 I
POPTR_0010s18420 Populus trichocarpa POPTR_0010s18420 I
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I
POPTR_0013s09280 Populus trichocarpa POPTR_0013s09280 I
POPTR_0019s09400 Populus trichocarpa POPTR_0019s09400 I
Pm010886 Prunus mume Pm010886 I
Pm022820 Prunus mume Pm022820 I
Pm024260 Prunus mume Pm024260 I
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I
PRUPE_ppa025341mg Prunus persica PRUPE_ppa025341mg I
PRUPE_ppa026376mg Prunus persica PRUPE_ppa026376mg I
27964.m000369 Ricinus communis 27964.m000369 I
29382.m000084 Ricinus communis 29382.m000084 I
29725.m000235 Ricinus communis 29725.m000235 I
30068.m002591 Ricinus communis 30068.m002591 I
SapurV1A.0093s0460 Salix purpurea SapurV1A.0093s0460 I
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I
SapurV1A.0164s0070 Salix purpurea SapurV1A.0164s0070 I
SapurV1A.0907s0070 Salix purpurea SapurV1A.0907s0070 I
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I
SapurV1A.1219s0030 Salix purpurea SapurV1A.1219s0030 I
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I
Si006565m.g Setaria italica Si006565m.g I
Si007822m.g Setaria italica Si007822m.g I
Si012319m.g Setaria italica Si012319m.g I
Si017641m.g Setaria italica Si017641m.g I
Solyc06g063430.1 Solanum lycopersicum Solyc06g063430.1 I
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I
Solyc12g017400.1 Solanum lycopersicum Solyc12g017400.1 I
PGSC0003DMG400009665 Solanum tuberosum PGSC0003DMG400009665 I
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I
Sb04g009180 Sorghum bicolor Sb04g009180 I
Sb06g017720 Sorghum bicolor Sb06g017720 I
Sb07g001550 Sorghum bicolor Sb07g001550 I
Sb10g002120 Sorghum bicolor Sb10g002120 I
Sb10g020850 Sorghum bicolor Sb10g020850 I
Sb10g020860 Sorghum bicolor Sb10g020860 I
TCM_005047 Theobroma cacao TCM_005047 I
TCM_015621 Theobroma cacao TCM_015621 I
TCM_033728 Theobroma cacao TCM_033728 I
TCM_036034 Theobroma cacao TCM_036034 I
Traes_2AL_F0B17F0EA Triticum aestivum Traes_2AL_F0B17F0EA I
Traes_2BL_209C14A8F Triticum aestivum Traes_2BL_209C14A8F I
Traes_2DL_70F83D4B9 Triticum aestivum Traes_2DL_70F83D4B9 I
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I
TRIUR3_14210 Triticum urartu TRIUR3_14210 I
TRIUR3_28259 Triticum urartu TRIUR3_28259 I
ANAC012 Vitis vinifera VIT_02s0025g02710 I
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I
VIT_18s0089g01120 Vitis vinifera VIT_18s0089g01120 I
SMB Vitis vinifera VIT_19s0085g01210 I
GRMZM2G041746 Zea mays GRMZM2G041746 I
GRMZM2G069047 Zea mays GRMZM2G069047 I
GRMZM2G092465 Zea mays GRMZM2G092465 I
GRMZM2G099144 Zea mays GRMZM2G099144 I
GRMZM2G104074 Zea mays GRMZM2G104074 I
GRMZM2G155816 Zea mays GRMZM2G155816 I
GRMZM2G171395 Zea mays GRMZM2G171395 I
GRMZM2G435824 Zea mays GRMZM2G435824 I