Bra031700 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra031700 T031529_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.914 1.000
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.914 1.000
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.914 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.914 0.902
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.902 0.922
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.902 0.882
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.875 0.882
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.862 0.804
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.862 0.804
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.855 0.784
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.852 0.765
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.852 0.745
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.852 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031700.1-P bHLH 181 231

Links

Other bHLH family TFs
Other Brassica rapa TFs

905 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
BHLH106 Arabidopsis thaliana AT2G41130 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
Bo4g190700 Brassica oleracea Bo4g190700 N
Bra004599 Brassica rapa Bra004599 N
Bra014672 Brassica rapa Bra014672 N
Bra016951 Brassica rapa Bra016951 N
PK20225.1 Cannabis sativa PK20225.1 D
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
Ca_06386 Cicer arietinum Ca_06386 I
Cla019977 Citrullus lanatus Cla019977 I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Eucgr.D00509 Eucalyptus grandis Eucgr.D00509 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
GLYMA07G32690 Glycine max GLYMA07G32690 I
GLYMA02G15780 Glycine max GLYMA02G15780 I
GLYMA13G36741 Glycine max GLYMA13G36741 I
GLYMA12G33751 Glycine max GLYMA12G33751 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
MLOC_64390 Hordeum vulgare MLOC_64390 I
LPERR01G07000 Leersia perrieri LPERR01G07000 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
Lus10013917.g Linum usitatissimum Lus10013917.g I
Lus10001885.g Linum usitatissimum Lus10001885.g I
MDP0000256492 Malus domestica MDP0000256492 N
MDP0000249969 Malus domestica MDP0000249969 I
cassava32077.m1 Manihot esculenta cassava32077.m1 I
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
MTR_4g087920 Medicago truncatula MTR_4g087920 I
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
OBART03G11320 Oryza barthii OBART03G11320 I
OBART05G04450 Oryza barthii OBART05G04450 N
OB03G21490 Oryza brachyantha OB03G21490 I
OB01G17480 Oryza brachyantha OB01G17480 I
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
BGIOSGA003013 Oryza indica BGIOSGA003013 I
OLONG_004075 Oryza longistaminata OLONG_004075 I
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G07330 Oryza meridionalis OMERI01G07330 I
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA01G09540 Oryza nivara ONIVA01G09540 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
OPUNC01G07130 Oryza punctata OPUNC01G07130 I
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS01G0218100 Oryza sativa OS01G0218100 I
OS03G0260600 Oryza sativa OS03G0260600 I
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N
29900.m001610 Ricinus communis 29900.m001610 I
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
Si002517m.g Setaria italica Si002517m.g I
Si039730m.g Setaria italica Si039730m.g I
Sb01g040450 Sorghum bicolor Sb01g040450 I
Sb03g001730 Sorghum bicolor Sb03g001730 I
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G016039 Zea mays GRMZM2G016039 I