CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MSC *(Loxodonta africana)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSLAFG00000002649	T034900_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Msc M01730_2.00	Mus musculus	NVCRKMYGBN	NVCRKMYGBN	PBM Weirauch et al.(2014) pTH5112	0.914	1.000
MSC M02801_2.00	Homo sapiens	AACAGCTGTT	AACAGCTGTT	SELEX Jolma et al.(2013) MSC_1	0.914	1.000
MSC M04183_2.00	Homo sapiens	NRMCAGMTGBYN	NRVCAKCTGKYN	SELEX Yin et al.(2017) MSC_eDBD_HT-SELEX_1	0.914	1.000
MSC M04184_2.00	Homo sapiens	NRVCAYVTGBYN	NRVCABRTGBYN	SELEX Yin et al.(2017) MSC_eDBD_HT-SELEX_2	0.914	1.000
MSC M04187_2.00	Homo sapiens	NRMCAGCTGBYV	BRVCAGCTGKYN	SELEX Yin et al.(2017) MSC_FL_HT-SELEX_1	0.914	1.000
MSC M04188_2.00	Homo sapiens	BRMCATATGKYN	NRMCATATGKYV	SELEX Yin et al.(2017) MSC_FL_HT-SELEX_2	0.914	1.000
MSC M04185_2.00	Homo sapiens	NRVCAGCTGBBN	NVVCAGCTGBYN	SELEX Yin et al.(2017) MSC_eDBD_Methyl-HT-SELEX_1	0.914	1.000
MSC M04186_2.00	Homo sapiens	BRMCATATGKYV	BRMCATATGKYV	SELEX Yin et al.(2017) MSC_eDBD_Methyl-HT-SELEX_2	0.914	1.000
MSC M04189_2.00	Homo sapiens	BRACAGCTGTYV	BRACAGCTGTYV	SELEX Yin et al.(2017) MSC_FL_Methyl-HT-SELEX_1	0.914	1.000
MSC M04190_2.00	Homo sapiens	BRMCATATGKYV	BRMCATATGKYV	SELEX Yin et al.(2017) MSC_FL_Methyl-HT-SELEX_2	0.914	1.000
Tcf21 M01746_2.00	Mus musculus	RMCAKMTGK	MCAKMTGKY	PBM Weirauch et al.(2014) pTH5087	0.914	0.981
Tcf21 M02819_2.00	Mus musculus	VNAACAGCTGTTVN	NBAACAGCTGTTNB	SELEX Jolma et al.(2013) Tcf21_1	0.914	0.981
TCF21 M04092_2.00	Homo sapiens	BAACAGCTGBYN	NRVCAGCTGTTV	SELEX Yin et al.(2017) TCF21_eDBD_HT-SELEX_1	0.914	0.981
TCF21 M04093_2.00	Homo sapiens	NRCCATATGKYV	BRMCATATGGYN	SELEX Yin et al.(2017) TCF21_eDBD_HT-SELEX_2	0.914	0.981
TCF21 M04094_2.00	Homo sapiens	BAACAGCTGTYV	BRACAGCTGTTV	SELEX Yin et al.(2017) TCF21_eDBD_Methyl-HT-SELEX_1	0.914	0.981
TCF21 M04095_2.00	Homo sapiens	BACCATATGKYV	BRMCATATGGTV	SELEX Yin et al.(2017) TCF21_eDBD_Methyl-HT-SELEX_2	0.914	0.981
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLAFP00000002213	bHLH	112	164	QRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLR
ENSLAFP00000028428	bHLH	82	134	QRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLR

Links
Other bHLH family TFs
Other *Loxodonta africana* TFs

189 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI1G77150	Brachypodium distachyon	BRADI1G77150	N	0.000
BRADI3G16500	Brachypodium distachyon	BRADI3G16500	N	0.000
Cla006845	Citrullus lanatus	Cla006845	I	0.000
Cucsa.193290	Cucumis sativus	Cucsa.193290	I	0.000
MLOC_74058	Hordeum vulgare	MLOC_74058	N	0.000
MLOC_66387	Hordeum vulgare	MLOC_66387	I	0.000
LPERR10G12990	Leersia perrieri	LPERR10G12990	N	0.000
LPERR08G03490	Leersia perrieri	LPERR08G03490	N	0.000
LPERR03G01560	Leersia perrieri	LPERR03G01560	N	0.000
LPERR02G22870	Leersia perrieri	LPERR02G22870	I	0.000
GSMUA_Achr4G26430_001	Musa acuminata	GSMUA_Achr4G26430_001	I	0.000
OBART10G17010	Oryza barthii	OBART10G17010	N	0.000
OBART02G28100	Oryza barthii	OBART02G28100	N	0.000
OBART03G01650	Oryza barthii	OBART03G01650	N	0.000
OB02G35380	Oryza brachyantha	OB02G35380	I	0.000
OB03G11610	Oryza brachyantha	OB03G11610	N	0.000
OB10G24100	Oryza brachyantha	OB10G24100	N	0.000
ORGLA02G0241100	Oryza glaberrima	ORGLA02G0241100	N	0.000
ORGLA03G0014300	Oryza glaberrima	ORGLA03G0014300	N	0.000
ORGLA08G0028800	Oryza glaberrima	ORGLA08G0028800	N	0.000
ORGLA10G0119700	Oryza glaberrima	ORGLA10G0119700	N	0.000
OGLUM02G28660	Oryza glumaepatula	OGLUM02G28660	N	0.000
OGLUM03G01630	Oryza glumaepatula	OGLUM03G01630	N	0.000
OGLUM10G17040	Oryza glumaepatula	OGLUM10G17040	N	0.000
BGIOSGA005835	Oryza indica	BGIOSGA005835	N	0.000
BGIOSGA031489	Oryza indica	BGIOSGA031489	N	0.000
BGIOSGA028020	Oryza indica	BGIOSGA028020	N	0.000
BGIOSGA011738	Oryza indica	BGIOSGA011738	N	0.000
OMERI02G27240	Oryza meridionalis	OMERI02G27240	N	0.000
OMERI03G01600	Oryza meridionalis	OMERI03G01600	N	0.000
OMERI08G03480	Oryza meridionalis	OMERI08G03480	N	0.000
OMERI10G13480	Oryza meridionalis	OMERI10G13480	N	0.000
ONIVA02G30750	Oryza nivara	ONIVA02G30750	N	0.000
ONIVA08G03420	Oryza nivara	ONIVA08G03420	N	0.000
ONIVA10G18740	Oryza nivara	ONIVA10G18740	N	0.000
ONIVA12G15340	Oryza nivara	ONIVA12G15340	N	0.000
OPUNC08G03290	Oryza punctata	OPUNC08G03290	N	0.000
OPUNC10G16940	Oryza punctata	OPUNC10G16940	N	0.000
OPUNC02G25780	Oryza punctata	OPUNC02G25780	N	0.000
OPUNC03G01540	Oryza punctata	OPUNC03G01540	N	0.000
ORUFI10G18030	Oryza rufipogon	ORUFI10G18030	N	0.000
ORUFI08G03850	Oryza rufipogon	ORUFI08G03850	N	0.000
ORUFI02G29620	Oryza rufipogon	ORUFI02G29620	N	0.000
OS02G0683500	Oryza sativa	OS02G0683500	N	0.000
OS03G0120900	Oryza sativa	OS03G0120900	N	0.000
OS08G0157700	Oryza sativa	OS08G0157700	N	0.000
OS10G0537100	Oryza sativa	OS10G0537100	N	0.000
Pavir.Ia04549	Panicum virgatum	Pavir.Ia04549	N	0.000
Pavir.Ga00960	Panicum virgatum	Pavir.Ga00960	N	0.000
Pavir.Fb00403	Panicum virgatum	Pavir.Fb00403	N	0.000
Pavir.Ib00059	Panicum virgatum	Pavir.Ib00059	N	0.000
Pavir.J06582	Panicum virgatum	Pavir.J06582	N	0.000
Pavir.Ab02711	Panicum virgatum	Pavir.Ab02711	I	0.000
Pavir.Aa00929	Panicum virgatum	Pavir.Aa00929	N	0.000
Pavir.J38226	Panicum virgatum	Pavir.J38226	N	0.000
Si011823m.g	Setaria italica	Si011823m.g	N	0.000
Si036864m.g	Setaria italica	Si036864m.g	N	0.000
Si020241m.g	Setaria italica	Si020241m.g	N	0.000
Si014362m.g	Setaria italica	Si014362m.g	N	0.000
Sb07g003880	Sorghum bicolor	Sb07g003880	N	0.000
Sb06g026370	Sorghum bicolor	Sb06g026370	N	0.000
Sb04g031710	Sorghum bicolor	Sb04g031710	N	0.000
Sb01g049150	Sorghum bicolor	Sb01g049150	N	0.000
Traes_4AL_445A910EB	Triticum aestivum	Traes_4AL_445A910EB	N	0.000
Traes_4BL_D9784B20C1	Triticum aestivum	Traes_4BL_D9784B20C1	N	0.000
Traes_4DL_A83084AC1	Triticum aestivum	Traes_4DL_A83084AC1	N	0.000
Traes_6AL_44AA5642C	Triticum aestivum	Traes_6AL_44AA5642C	I	0.000
Traes_6DL_359607E93	Triticum aestivum	Traes_6DL_359607E93	I	0.000
GRMZM2G180168	Zea mays	GRMZM2G180168	N	0.000
GRMZM2G142999	Zea mays	GRMZM2G142999	N	0.000
GRMZM2G125095	Zea mays	GRMZM2G125095	N	0.000
GRMZM2G102059	Zea mays	GRMZM2G102059	N	0.000
GRMZM2G098443	Zea mays	GRMZM2G098443	N	0.000
GRMZM2G082227	Zea mays	GRMZM2G082227	N	0.000
GRMZM2G018485	Zea mays	GRMZM2G018485	N	0.000
GRMZM2G024948	Zea mays	GRMZM2G024948	N	0.000

MSC (Loxodonta africana) bHLH

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

189 Related TFs

MSC **(Loxodonta africana)
bHLH**