ascl1a (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000016504 T036468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASCL1
M04135_2.00 		Homo sapiens
NRCASSTGYN
NRCASSTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX 		0.894 0.980
ASCL1
M08055_2.00 		Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN		 ChIP-seq
Mathelier et al.(2014)
MA1100.1 		0.894 0.980
ASCL1
M08730_2.00 		Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN		 Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A 		0.894 0.980
Ascl1
M08748_2.00 		Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV		 Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A 		0.894 0.980
Ascl1
M09464_2.00 		Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN		 Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840 		0.894 0.980
ASCL1
M09855_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_01 		0.894 0.980
ASCL1
M09856_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_02 		0.894 0.980
ASCL1
M09857_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6 		0.894 0.980
ASCL1
M04136_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX 		0.894 0.980
Ascl2
M00117_2.00 		Mus musculus
NVCABVTGBN
NVCABVTGBN		 PBM
Badis et al.(2009)
Ascl2_2654 		0.851 0.860
Ascl2
M02814_2.00 		Mus musculus
RRCAGCTGYY
RRCAGCTGYY		 SELEX
Jolma et al.(2013)
Ascl2_1 		0.851 0.860
Ascl2
M08744_2.00 		Mus musculus
RGCAGSTGB
VCASCTGCY		 Misc
Kulakovskiy et al.(2013)
ASCL2_MOUSE.H11MO.0.C 		0.851 0.860
ASCL2
M04207_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_eDBD_HT-SELEX 		0.851 0.840
ASCL2
M04209_2.00 		Homo sapiens
VCACRACGCD
HGCGTYGTGB		 SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_1 		0.851 0.840
ASCL2
M04210_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_2 		0.851 0.840
ASCL2
M04208_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_eDBD_Methyl-HT-SELEX 		0.851 0.840
ASCL2
M04211_2.00 		Homo sapiens
VRCAGCTGYB
VRCAGCTGYB		 SELEX
Yin et al.(2017)
ASCL2_FL_Methyl-HT-SELEX 		0.851 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000020661 bHLH 60 110

Links

Other bHLH family TFs
Other Oryzias latipes TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11712 Aegilops tauschii F775_11712 N
BRADI5G08167 Brachypodium distachyon BRADI5G08167 N
PK06349.1 Cannabis sativa PK06349.1 N
Ca_08511 Cicer arietinum Ca_08511 N
Cla000701 Citrullus lanatus Cla000701 N
Ciclev10030636m.g Citrus clementina Ciclev10030636m.g N
orange1.1g044976m.g Citrus sinensis orange1.1g044976m.g N
Eucgr.H04623 Eucalyptus grandis Eucgr.H04623 N
Gorai.009G332200 Gossypium raimondii Gorai.009G332200 N
LPERR04G07320 Leersia perrieri LPERR04G07320 N
cassava42936.valid.m1 Manihot esculenta cassava42936.valid.m1 N
GSMUA_Achr9G01330_001 Musa acuminata GSMUA_Achr9G01330_001 N
OBART04G10490 Oryza barthii OBART04G10490 N
OB04G17680 Oryza brachyantha OB04G17680 N
ORGLA02G0342600 Oryza glaberrima ORGLA02G0342600 N
ORGLA04G0075400 Oryza glaberrima ORGLA04G0075400 N
OGLUM04G10170 Oryza glumaepatula OGLUM04G10170 N
BGIOSGA016274 Oryza indica BGIOSGA016274 N
OPUNC04G08570 Oryza punctata OPUNC04G08570 N
ORUFI04G11670 Oryza rufipogon ORUFI04G11670 N
OS04G0388500 Oryza sativa OS04G0388500 N
Pavir.Gb01963 Panicum virgatum Pavir.Gb01963 N
Pavir.Ga01952 Panicum virgatum Pavir.Ga01952 N
PRUPE_ppa000516mg Prunus persica PRUPE_ppa000516mg N
Si009249m.g Setaria italica Si009249m.g N
Solyc05g015650.2 Solanum lycopersicum Solyc05g015650.2 N
Sb06g013850 Sorghum bicolor Sb06g013850 N
TCM_008731 Theobroma cacao TCM_008731 N
Traes_2AL_773EA7A5A Triticum aestivum Traes_2AL_773EA7A5A N
Traes_7DS_7B303CBAF Triticum aestivum Traes_7DS_7B303CBAF N
Traes_2DL_474B433DF Triticum aestivum Traes_2DL_474B433DF N
Traes_2BL_A89BDB407 Triticum aestivum Traes_2BL_A89BDB407 N
TRIUR3_26386 Triticum urartu TRIUR3_26386 N
VIT_01s0010g03850 Vitis vinifera VIT_01s0010g03850 N
GRMZM2G143205 Zea mays GRMZM2G143205 N