USF1 (Vicugna pacos)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSVPAG00000008421 T038081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000007836 bHLH 200 255

Links

Other bHLH family TFs
Other Vicugna pacos TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_16855 Aegilops tauschii F775_16855 I
F775_24386 Aegilops tauschii F775_24386 I
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I
PAN Arabidopsis lyrata fgenesh2_kg.2__1120__AT1G68640.1 I
TGA10 Arabidopsis thaliana AT5G06839 D
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I
Bostr.26959s0025 Boechera stricta Bostr.26959s0025 I
Bo9g175780 Brassica oleracea Bo9g175780 I
Bo3g004060 Brassica oleracea Bo3g004060 I
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I
Carubv10003744m.g Capsella rubella Carubv10003744m.g I
Ciclev10031441m.g Citrus clementina Ciclev10031441m.g I
orange1.1g018357m.g Citrus sinensis orange1.1g018357m.g I
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I
GLYMA03G29825 Glycine max GLYMA03G29825 I
GLYMA19G32715 Glycine max GLYMA19G32715 I
MLOC_58614 Hordeum vulgare MLOC_58614 I
LPERR05G14450 Leersia perrieri LPERR05G14450 I
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I
OBART05G18270 Oryza barthii OBART05G18270 I
OB05G26080 Oryza brachyantha OB05G26080 I
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I
BGIOSGA019942 Oryza indica BGIOSGA019942 I
OLONG_005656 Oryza longistaminata OLONG_005656 I
OMERI05G15750 Oryza meridionalis OMERI05G15750 I
ONIVA05G19180 Oryza nivara ONIVA05G19180 I
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I
OS05G0443900 Oryza sativa OS05G0443900 I
Pavir.Hb01807 Panicum virgatum Pavir.Hb01807 I
PDK_20s1405291g002 Phoenix dactylifera PDK_20s1405291g002 I
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I
Traes_6BS_65CDD608F Triticum aestivum Traes_6BS_65CDD608F I
Traes_6DS_FD90D1145 Triticum aestivum Traes_6DS_FD90D1145 I
Traes_6AS_9916DDE4D Triticum aestivum Traes_6AS_9916DDE4D I
Traes_1DS_0CFC1995D Triticum aestivum Traes_1DS_0CFC1995D I
Traes_1AL_3B659AABA Triticum aestivum Traes_1AL_3B659AABA I
GRMZM2G029979 Zea mays GRMZM2G029979 I