Gfo_R002785 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R002785 T047307_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.777 1.000
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.777 1.000
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.777 1.000
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.777 1.000
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.777 1.000
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.777 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002785 bHLH 1 41

Links

Other bHLH family TFs
Other Geospiza fortis TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_30638 Aegilops tauschii F775_30638 I 0.000
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I 0.000
BRADI1G43840 Brachypodium distachyon BRADI1G43840 I 0.000
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.000
PK17141.1 Cannabis sativa PK17141.1 I 0.000
Ca_23230 Cicer arietinum Ca_23230 N 0.000
Cla004701 Citrullus lanatus Cla004701 I 0.000
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.000
Cucsa.011210 Cucumis sativus Cucsa.011210 I 0.000
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.000
gene27940-v1.0-hybrid Fragaria vesca gene27940-v1.0-hybrid I 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
GLYMA05G09110 Glycine max GLYMA05G09110 I 0.000
GLYMA16G07501 Glycine max GLYMA16G07501 N 0.000
GLYMA19G00640 Glycine max GLYMA19G00640 N 0.000
GLYMA19G08510 Glycine max GLYMA19G08510 N 0.000
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.000
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.000
LPERR02G18380 Leersia perrieri LPERR02G18380 N 0.000
Lus10003668.g Linum usitatissimum Lus10003668.g N 0.000
MDP0000283975 Malus domestica MDP0000283975 N 0.000
MDP0000663564 Malus domestica MDP0000663564 I 0.000
cassava3690.m1 Manihot esculenta cassava3690.m1 I 0.000
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.000
MTR_7g033320 Medicago truncatula MTR_7g033320 I 0.000
mgf018486m Mimulus guttatus mgf018486m I 0.000
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.000
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I 0.000
GSMUA_AchrUn_randomG17050_001 Musa acuminata GSMUA_AchrUn_randomG17050_001 I 0.000
OBART02G22660 Oryza barthii OBART02G22660 N 0.000
OB06G19430 Oryza brachyantha OB06G19430 I 0.000
OB02G30060 Oryza brachyantha OB02G30060 N 0.000
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N 0.000
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N 0.000
BGIOSGA006133 Oryza indica BGIOSGA006133 N 0.000
OLONG_021848 Oryza longistaminata OLONG_021848 N 0.000
OMERI02G22200 Oryza meridionalis OMERI02G22200 N 0.000
ONIVA02G25300 Oryza nivara ONIVA02G25300 N 0.000
OPUNC02G20570 Oryza punctata OPUNC02G20570 N 0.000
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N 0.000
OS02G0594800 Oryza sativa OS02G0594800 N 0.000
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.000
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.000
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.000
Pm015625 Prunus mume Pm015625 I 0.000
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I 0.000
29917.m002016 Ricinus communis 29917.m002016 I 0.000
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.000
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000
Solyc02g093420.2 Solanum lycopersicum Solyc02g093420.2 I 0.000
PGSC0003DMG400012607 Solanum tuberosum PGSC0003DMG400012607 I 0.000
Sb06g020103 Sorghum bicolor Sb06g020103 I 0.000
Sb04g024780 Sorghum bicolor Sb04g024780 N 0.000
TCM_016984 Theobroma cacao TCM_016984 I 0.000
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.000
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.000
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.000
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.000
GRMZM2G104078 Zea mays GRMZM2G104078 N 0.000
GRMZM2G038073 Zea mays GRMZM2G038073 N 0.000