estExt_GenewiseH_1.C_3210011 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_GenewiseH_1.C_3210011 T048482_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PTF1A
M04156_2.00 		Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT		 SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX 		0.914 0.904
PTF1A
M08736_2.00 		Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS		 Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B 		0.914 0.904
Ptf1a
M08757_2.00 		Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS		 Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A 		0.914 0.904
Ptf1a
M09470_2.00 		Mus musculus
NVVCASSTGB
VCASSTGBBN		 Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459 		0.914 0.904
PTF1A
M04157_2.00 		Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT		 SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX 		0.914 0.904
Fer1
M03620_2.00 		Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB		 SELEX
Nitta et al.(2015)
Fer1_1 		0.894 0.865
Fer1
M05990_2.00 		Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD		 B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475 		0.894 0.865
Fer1
M05991_2.00 		Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW		 B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475 		0.894 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_GenewiseH_1.C_3210011 bHLH 66 118

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001736 Aedes aegypti AAEL001736 N
ENSAMEG00000008949 Ailuropoda melanoleuca ENSAMEG00000008949 N
Alligator_sinensis_CCG004871.1 Alligator sinensis Alligator_sinensis_CCG004871.1 N
ENSAPLG00000007652 Anas platyrhynchos ENSAPLG00000007652 N
GB51085 Apis mellifera GB51085 N
ENSAMXG00000008885 Astyanax mexicanus ENSAMXG00000008885 N
BGLB013051 Biomphalaria glabrata BGLB013051 N
ENSP00000352819-D1 Bos grunniens ENSP00000352819-D1 N
PRDM13 Bos taurus ENSBTAG00000006095 N
gw.79.7.1 Branchiostoma floridae gw.79.7.1 N
PRDM13 Callithrix jacchus ENSCJAG00000001421 N
PRDM13 Canis familiaris ENSCAFG00000023314 N
CapteG164570 Capitella teleta CapteG164570 N
Cmyd_10002903 Chelonia mydas Cmyd_10002903 N
ENSCSAG00000014622 Chlorocebus sabaeus ENSCSAG00000014622 N
PRDM13 Choloepus hoffmanni ENSCHOG00000011613 N
CGI_10026455 Crassostrea gigas CGI_10026455 N
CpipJ_CPIJ016312 Culex pipiens CpipJ_CPIJ016312 N
CPIJ016312 Culex quinquefasciatus CPIJ016312 N
prdm13 Danio rerio ENSDARG00000078701 N
DAPPUDRAFT_111472 Daphnia pulex DAPPUDRAFT_111472 N
PRDM13 Dasypus novemcinctus ENSDNOG00000006520 N
YQE_11778 Dendroctonus ponderosae YQE_11778 N
ENSDORG00000003558 Dipodomys ordii ENSDORG00000003558 N
GF23530 Drosophila ananassae FBgn0100524 N
GG15330 Drosophila erecta FBgn0107582 N
CG13296 Drosophila melanogaster FBgn0035687 N
GL15563 Drosophila persimilis FBgn0153167 N
GA12179 Drosophila pseudoobscura FBgn0072227 N
GM14767 Drosophila sechellia FBgn0169688 N
GD13944 Drosophila simulans FBgn0185640 N
GK17273 Drosophila willistoni FBgn0219272 N
GE21548 Drosophila yakuba FBgn0238803 N
PRDM13 Echinops telfairi ENSETEG00000004709 N
PRDM13 Felis catus ENSFCAG00000010288 N
ENSGMOG00000006125 Gadus morhua ENSGMOG00000006125 N
prdm13 Gasterosteus aculeatus ENSGACG00000005032 N
PRDM13 Gorilla gorilla ENSGGOG00000006947 N
HHAL009600-PA Halyomorpha halys HHAL009600-PA N
HelroG144862 Helobdella robusta HelroG144862 N
PRDM13 Homo sapiens ENSG00000112238 N
ENSSTOG00000016567 Ictidomys tridecemlineatus ENSSTOG00000016567 N
ENSLACG00000008814 Latimeria chalumnae ENSLACG00000008814 N
ENSLOCG00000017084 Lepisosteus oculatus ENSLOCG00000017084 N
LotgiG130257 Lottia gigantea LotgiG130257 N
PRDM13 Loxodonta africana ENSLAFG00000012439 N
ENSP00000352819 Macaca fascicularis ENSP00000352819 N
MESCA000924 Megaselia scalaris MESCA000924 N
ENSMICG00000001097 Microcebus murinus ENSMICG00000001097 N
PRDM13 Monodelphis domestica ENSMODG00000018089 N
ENSMPUG00000001648 Mustela putorius furo ENSMPUG00000001648 N
Prdm13 Mus musculus ENSMUSG00000040478 N
PRDM13 Myotis lucifugus ENSMLUG00000001899 N
NV14899 Nasonia vitripennis NV14899 N
NEMVEDRAFT_v1g66221 Nematostella vectensis NEMVEDRAFT_v1g66221 N
ENSNLEG00000013845 Nomascus leucogenys ENSNLEG00000013845 N
Ocbimv22009191m.g Octopus bimaculoides Ocbimv22009191m.g N
Ogr12758 Ophisaurus gracilis Ogr12758 N
ENSONIG00000000112 Oreochromis niloticus ENSONIG00000000112 N
PRDM13 Oryctolagus cuniculus ENSOCUG00000003216 N
prdm13 Oryzias latipes ENSORLG00000002129 N
PRDM13 Otolemur garnettii ENSOGAG00000031927 N
PRDM13 Pan troglodytes ENSPTRG00000018445 N
ENSPANG00000017638 Papio anubis ENSPANG00000017638 N
PHUM605290 Pediculus humanus PHUM605290 N
ENSPSIG00000002567 Pelodiscus sinensis ENSPSIG00000002567 N
ENSPFOG00000019371 Poecilia formosa ENSPFOG00000019371 N
ENSPPYG00000016866 Pongo abelii ENSPPYG00000016866 N
PRDM13 Pteropus vampyrus ENSPVAG00000001695 N
Prdm13 Rattus norvegicus ENSRNOG00000007683 N
RPRC014451 Rhodnius prolixus RPRC014451 N
Sakowv30027334m.g Saccoglossus kowalevskii Sakowv30027334m.g N
ENSSHAG00000013340 Sarcophilus harrisii ENSSHAG00000013340 N
SMU15022318 Schmidtea mediterranea SMU15022318 N
SMAR010327 Strigamia maritima SMAR010327 N
SMAR008272 Strigamia maritima SMAR008272 N
SPU_012050 Strongylocentrotus purpuratus SPU_012050 N
PRDM13 Sus scrofa ENSSSCG00000004354 N
prdm13 Takifugu rubripes ENSTRUG00000000334 N
tetur10g01540 Tetranychus urticae tetur10g01540 N
prdm13 Tetraodon nigroviridis ENSTNIG00000006867 N
TC014373 Tribolium castaneum TC014373 N
PRDM13 Tursiops truncatus ENSTTRG00000004705 N
prdm13 Xenopus tropicalis XB-GENE-960155 N
ENSXMAG00000002547 Xiphophorus maculatus ENSXMAG00000002547 N
L798_05013 Zootermopsis nevadensis L798_05013 N