Carubv10001523m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10001523m.g T049329_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001523m bHLH 155 202

Links

Other bHLH family TFs
Other Capsella rubella TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N 0.872
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N 0.914
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N 0.914
AT1G03040 Arabidopsis thaliana AT1G03040 N 0.914
UNE12 Arabidopsis thaliana AT4G02590 N 0.914
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N 0.914
BRADI1G05430 Brachypodium distachyon BRADI1G05430 I 0.861
BRADI1G55427 Brachypodium distachyon BRADI1G55427 I 0.861
Bo01031s030 Brassica oleracea Bo01031s030 N 0.914
Bo2g100750 Brassica oleracea Bo2g100750 N 0.914
Bo5g003580 Brassica oleracea Bo5g003580 N 0.914
Bo9g005930 Brassica oleracea Bo9g005930 N 0.914
Bra000872 Brassica rapa Bra000872 N 0.914
Bra018539 Brassica rapa Bra018539 N 0.914
Bra033368 Brassica rapa Bra033368 N 0.914
Bra036256 Brassica rapa Bra036256 N 0.914
PK20184.1 Cannabis sativa PK20184.1 N 0.872
PK25419.1 Cannabis sativa PK25419.1 N 0.884
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N 0.914
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N 0.914
Carubv10009831m.g Capsella rubella Carubv10009831m.g N 0.914
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N 0.872
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N 0.849
Ca_03755 Cicer arietinum Ca_03755 N 0.872
Ca_07790 Cicer arietinum Ca_07790 N 0.884
Ca_12194 Cicer arietinum Ca_12194 N 0.884
Cla011475 Citrullus lanatus Cla011475 N 0.872
Cla015040 Citrullus lanatus Cla015040 N 0.884
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N 0.852
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N 0.884
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N 0.884
Cucsa.289090 Cucumis sativus Cucsa.289090 N 0.872
Cucsa.388780 Cucumis sativus Cucsa.388780 N 0.884
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N 0.884
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N 0.872
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N 0.914
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N 0.914
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N 0.873
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N 0.872
GLYMA02G16110 Glycine max GLYMA02G16110 N 0.884
GLYMA03G31510 Glycine max GLYMA03G31510 N 0.884
GLYMA10G03690 Glycine max GLYMA10G03690 N 0.884
GLYMA10G30430 Glycine max GLYMA10G30430 N 0.872
GLYMA19G34360 Glycine max GLYMA19G34360 N 0.884
GLYMA20G36770 Glycine max GLYMA20G36770 N 0.872
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N 0.884
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N 0.858
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N 0.858
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N 0.884
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N 0.872
LPERR03G31640 Leersia perrieri LPERR03G31640 I 0.861
LPERR07G04600 Leersia perrieri LPERR07G04600 I 0.861
Lus10002720.g Linum usitatissimum Lus10002720.g N 0.849
Lus10006587.g Linum usitatissimum Lus10006587.g N 0.902
Lus10014726.g Linum usitatissimum Lus10014726.g N 0.849
Lus10015909.g Linum usitatissimum Lus10015909.g N 0.902
Lus10018761.g Linum usitatissimum Lus10018761.g N 0.849
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N 0.884
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N 0.859
MDP0000176749 Malus domestica MDP0000176749 N 0.873
MDP0000295593 Malus domestica MDP0000295593 N 0.872
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N 0.902
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N 0.890
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N 0.884
MTR_1g070870 Medicago truncatula MTR_1g070870 N 0.884
MTR_1g080890 Medicago truncatula MTR_1g080890 N 0.872
mgf001465m Mimulus guttatus mgf001465m N 0.846
GSMUA_Achr4G21070_001 Musa acuminata GSMUA_Achr4G21070_001 I 0.873
GSMUA_Achr5G03100_001 Musa acuminata GSMUA_Achr5G03100_001 I 0.873
GSMUA_Achr9G25560_001 Musa acuminata GSMUA_Achr9G25560_001 I 0.861
OBART03G37400 Oryza barthii OBART03G37400 I 0.861
OBART07G05280 Oryza barthii OBART07G05280 I 0.861
OB07G13990 Oryza brachyantha OB07G13990 I 0.861
ORGLA06G0244900 Oryza glaberrima ORGLA06G0244900 I 0.861
ORGLA07G0044500 Oryza glaberrima ORGLA07G0044500 I 0.861
OGLUM03G37150 Oryza glumaepatula OGLUM03G37150 I 0.861
OGLUM07G04790 Oryza glumaepatula OGLUM07G04790 I 0.861
BGIOSGA013729 Oryza indica BGIOSGA013729 I 0.861
BGIOSGA025266 Oryza indica BGIOSGA025266 I 0.861
OLONG_014165 Oryza longistaminata OLONG_014165 I 0.861
OMERI03G34570 Oryza meridionalis OMERI03G34570 I 0.861
OMERI05G15760 Oryza meridionalis OMERI05G15760 I 0.861
ONIVA03G38760 Oryza nivara ONIVA03G38760 I 0.861
ONIVA07G04020 Oryza nivara ONIVA07G04020 I 0.861
OPUNC03G34510 Oryza punctata OPUNC03G34510 I 0.861
OPUNC07G05040 Oryza punctata OPUNC07G05040 I 0.861
ORUFI07G05060 Oryza rufipogon ORUFI07G05060 I 0.861
OS03G0797600 Oryza sativa OS03G0797600 I 0.861
Pavir.Ba03672 Panicum virgatum Pavir.Ba03672 I 0.861
Pavir.J00283 Panicum virgatum Pavir.J00283 I 0.861
Pavir.J03221 Panicum virgatum Pavir.J03221 I 0.861
Pavir.J04249 Panicum virgatum Pavir.J04249 I 0.861
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N 0.884
POPTR_0005s05500 Populus trichocarpa POPTR_0005s05500 N 0.878
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N 0.858
Pm003525 Prunus mume Pm003525 N 0.872
Pm020229 Prunus mume Pm020229 N 0.873
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N 0.872
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N 0.873
29598.m000464 Ricinus communis 29598.m000464 N 0.902
29883.m001988 Ricinus communis 29883.m001988 N 0.884
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N 0.884
SapurV1A.0110s0180 Salix purpurea SapurV1A.0110s0180 N 0.854
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N 0.878
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N 0.858
Si030704m.g Setaria italica Si030704m.g I 0.861
Si036929m.g Setaria italica Si036929m.g I 0.861
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N 0.870
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N 0.858
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N 0.873
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N 0.873
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N 0.873
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N 0.858
Sb02g004570 Sorghum bicolor Sb02g004570 I 0.861
TCM_004217 Theobroma cacao TCM_004217 N 0.884
TCM_026346 Theobroma cacao TCM_026346 N 0.872
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N 0.872
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N 0.884
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N 0.872
GRMZM2G004356 Zea mays GRMZM2G004356 I 0.861
GRMZM2G162382 Zea mays GRMZM2G162382 I 0.861