orange1.1g014090m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g014090m.g T050548_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.911 0.920
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.911 0.920
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.911 0.920
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.940
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.940
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.940
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.940
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.940
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.940
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.868 0.860
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.855 0.840
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.855 0.840
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.847 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.842 0.600
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.842 0.560
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g014090m bHLH 330 387
orange1.1g014485m bHLH 330 379
orange1.1g014550m bHLH 330 379
orange1.1g015639m bHLH 310 359

Links

Other bHLH family TFs
Other Citrus sinensis TFs

470 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N
AT1G03040 Arabidopsis thaliana AT1G03040 N
UNE12 Arabidopsis thaliana AT4G02590 N
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N
BRADI1G05430 Brachypodium distachyon BRADI1G05430 I
BRADI1G55427 Brachypodium distachyon BRADI1G55427 I
Bo01031s030 Brassica oleracea Bo01031s030 N
Bo2g100750 Brassica oleracea Bo2g100750 N
Bo5g003580 Brassica oleracea Bo5g003580 N
Bra000872 Brassica rapa Bra000872 N
Bra018539 Brassica rapa Bra018539 N
Bra033368 Brassica rapa Bra033368 N
Bra036256 Brassica rapa Bra036256 N
PK20184.1 Cannabis sativa PK20184.1 N
PK25419.1 Cannabis sativa PK25419.1 N
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N
Carubv10001523m.g Capsella rubella Carubv10001523m.g N
Carubv10009831m.g Capsella rubella Carubv10009831m.g N
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N
Ca_03755 Cicer arietinum Ca_03755 N
Ca_07790 Cicer arietinum Ca_07790 N
Ca_12194 Cicer arietinum Ca_12194 N
Cla011475 Citrullus lanatus Cla011475 N
Cla015040 Citrullus lanatus Cla015040 N
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N
Cucsa.289090 Cucumis sativus Cucsa.289090 N
Cucsa.388780 Cucumis sativus Cucsa.388780 N
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N
GLYMA02G16110 Glycine max GLYMA02G16110 N
GLYMA03G31510 Glycine max GLYMA03G31510 N
GLYMA10G03690 Glycine max GLYMA10G03690 N
GLYMA10G30430 Glycine max GLYMA10G30430 N
GLYMA19G34360 Glycine max GLYMA19G34360 N
GLYMA20G36770 Glycine max GLYMA20G36770 N
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N
LPERR03G31640 Leersia perrieri LPERR03G31640 I
LPERR07G04600 Leersia perrieri LPERR07G04600 I
Lus10002720.g Linum usitatissimum Lus10002720.g N
Lus10006587.g Linum usitatissimum Lus10006587.g N
Lus10014726.g Linum usitatissimum Lus10014726.g N
Lus10015909.g Linum usitatissimum Lus10015909.g N
Lus10018761.g Linum usitatissimum Lus10018761.g N
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N
MDP0000176749 Malus domestica MDP0000176749 N
MDP0000295593 Malus domestica MDP0000295593 N
cassava18573.valid.m1 Manihot esculenta cassava18573.valid.m1 N
cassava22704.valid.m1 Manihot esculenta cassava22704.valid.m1 N
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N
MTR_1g070870 Medicago truncatula MTR_1g070870 N
MTR_1g080890 Medicago truncatula MTR_1g080890 N
mgf001465m Mimulus guttatus mgf001465m N
GSMUA_Achr4G21070_001 Musa acuminata GSMUA_Achr4G21070_001 I
GSMUA_Achr5G03100_001 Musa acuminata GSMUA_Achr5G03100_001 I
GSMUA_Achr9G25560_001 Musa acuminata GSMUA_Achr9G25560_001 I
OBART03G37400 Oryza barthii OBART03G37400 I
OBART07G05280 Oryza barthii OBART07G05280 I
OB07G13990 Oryza brachyantha OB07G13990 I
ORGLA06G0244900 Oryza glaberrima ORGLA06G0244900 I
ORGLA07G0044500 Oryza glaberrima ORGLA07G0044500 I
OGLUM03G37150 Oryza glumaepatula OGLUM03G37150 I
OGLUM07G04790 Oryza glumaepatula OGLUM07G04790 I
BGIOSGA013729 Oryza indica BGIOSGA013729 I
BGIOSGA025266 Oryza indica BGIOSGA025266 I
OLONG_014165 Oryza longistaminata OLONG_014165 I
OMERI03G34570 Oryza meridionalis OMERI03G34570 I
OMERI05G15760 Oryza meridionalis OMERI05G15760 I
ONIVA03G38760 Oryza nivara ONIVA03G38760 I
ONIVA07G04020 Oryza nivara ONIVA07G04020 I
OPUNC03G34510 Oryza punctata OPUNC03G34510 I
OPUNC07G05040 Oryza punctata OPUNC07G05040 I
ORUFI07G05060 Oryza rufipogon ORUFI07G05060 I
OS03G0797600 Oryza sativa OS03G0797600 I
Pavir.Ba03672 Panicum virgatum Pavir.Ba03672 I
Pavir.J00283 Panicum virgatum Pavir.J00283 I
Pavir.J03221 Panicum virgatum Pavir.J03221 I
Pavir.J04249 Panicum virgatum Pavir.J04249 I
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N
POPTR_0005s05500 Populus trichocarpa POPTR_0005s05500 N
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N
Pm003525 Prunus mume Pm003525 N
Pm020229 Prunus mume Pm020229 N
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N
29598.m000464 Ricinus communis 29598.m000464 N
29883.m001988 Ricinus communis 29883.m001988 N
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N
SapurV1A.0110s0180 Salix purpurea SapurV1A.0110s0180 N
SapurV1A.0729s0150 Salix purpurea SapurV1A.0729s0150 N
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N
Si030704m.g Setaria italica Si030704m.g I
Si036929m.g Setaria italica Si036929m.g I
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N
Sb02g004570 Sorghum bicolor Sb02g004570 I
TCM_004217 Theobroma cacao TCM_004217 N
TCM_026346 Theobroma cacao TCM_026346 N
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N
GRMZM2G004356 Zea mays GRMZM2G004356 I
GRMZM2G162382 Zea mays GRMZM2G162382 I