Carubv10011417m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10011417m.g T071565_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G19490
M09904_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G19490_01 		0.889 0.984
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011417m bZIP 151 214

Links

Other bZIP family TFs
Other Capsella rubella TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00443 Aquilegia coerulea Aquca_027_00443 I 0.804
AT1G19490 Arabidopsis thaliana AT1G19490 D 0.889
Bostr.7128s0552 Boechera stricta Bostr.7128s0552 I 0.901
Bo5g027510 Brassica oleracea Bo5g027510 I 0.872
Bra025743 Brassica rapa Bra025743 I 0.872
PK09783.1 Cannabis sativa PK09783.1 I 0.819
Cagra.1961s0053 Capsella grandiflora Cagra.1961s0053 I 0.901
evm.TU.supercontig_5.51 Carica papaya evm.TU.supercontig_5.51 I 0.826
Ca_00780 Cicer arietinum Ca_00780 I 0.792
Cla017983 Citrullus lanatus Cla017983 I 0.856
Ciclev10013541m.g Citrus clementina Ciclev10013541m.g I 0.846
orange1.1g011345m.g Citrus sinensis orange1.1g011345m.g I 0.846
Cucsa.240980 Cucumis sativus Cucsa.240980 I 0.856
Thhalv10009681m.g Eutrema salsugineum Thhalv10009681m.g I 0.889
gene30252-v1.0-hybrid Fragaria vesca gene30252-v1.0-hybrid I 0.854
GLYMA03G35101 Glycine max GLYMA03G35101 I 0.852
GLYMA19G37801 Glycine max GLYMA19G37801 I 0.856
Gorai.009G405400 Gossypium raimondii Gorai.009G405400 I 0.859
Lus10003255.g Linum usitatissimum Lus10003255.g I 0.855
Lus10035597.g Linum usitatissimum Lus10035597.g I 0.819
MDP0000147745 Malus domestica MDP0000147745 I 0.794
MDP0000203904 Malus domestica MDP0000203904 I 0.790
cassava31755.valid.m1 Manihot esculenta cassava31755.valid.m1 I 0.805
MTR_7g104190 Medicago truncatula MTR_7g104190 I 0.805
POPTR_0006s11550 Populus trichocarpa POPTR_0006s11550 I 0.860
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I 0.856
28779.m000140 Ricinus communis 28779.m000140 I 0.857
SapurV1A.0208s0130 Salix purpurea SapurV1A.0208s0130 I 0.860
Solyc09g009760.1 Solanum lycopersicum Solyc09g009760.1 I 0.791
TCM_022516 Theobroma cacao TCM_022516 I 0.873
VIT_08s0007g03640 Vitis vinifera VIT_08s0007g03640 I 0.823