Bra011931 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra011931 T081908_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.787 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.776 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.756 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.756 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011931.1-P C2H2 ZF 33 55
Bra011931.1-P C2H2 ZF 77 99

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_21293 Aegilops tauschii F775_21293 I 0.000
F775_21292 Aegilops tauschii F775_21292 I 0.000
mgf023686m Mimulus guttatus mgf023686m I 0.000
OB01G12610 Oryza brachyantha OB01G12610 I 0.000
OB05G32250 Oryza brachyantha OB05G32250 I 0.000
OGLUM01G02860 Oryza glumaepatula OGLUM01G02860 I 0.000
OGLUM02G34080 Oryza glumaepatula OGLUM02G34080 N 0.000
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.000
OS02G0764100 Oryza sativa OS02G0764100 N 0.000
Pavir.J27608 Panicum virgatum Pavir.J27608 N 0.000
Pavir.Ea00485 Panicum virgatum Pavir.Ea00485 I 0.000
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000
Traes_3AS_2E5380A2A Triticum aestivum Traes_3AS_2E5380A2A I 0.000
Traes_3AS_82DEC629B Triticum aestivum Traes_3AS_82DEC629B N 0.000
Traes_4BL_F6827247E Triticum aestivum Traes_4BL_F6827247E N 0.000
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.000
Traes_4DL_872A1302F Triticum aestivum Traes_4DL_872A1302F I 0.000
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.000
TRIUR3_24850 Triticum urartu TRIUR3_24850 I 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.000
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.000