Pavir.Ea00485 (Panicum virgatum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Pavir.Ea00485 T023830_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.710 0.710
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00485.1.p B3 165 273

Links

Other B3 family TFs
Other Panicum virgatum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
F775_21292 Aegilops tauschii F775_21292 I 0.819
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I 0.793
F775_21293 Aegilops tauschii F775_21293 I 0.790
Traes_4DL_872A1302F Triticum aestivum Traes_4DL_872A1302F I 0.790
TRIUR3_24850 Triticum urartu TRIUR3_24850 I 0.790
Traes_3AS_2E5380A2A Triticum aestivum Traes_3AS_2E5380A2A I 0.780
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.780
Traes_3AS_82DEC629B Triticum aestivum Traes_3AS_82DEC629B N 0.775
OB01G12610 Oryza brachyantha OB01G12610 I 0.770
OBART01G02620 Oryza barthii OBART01G02620 I 0.762
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.757
OGLUM01G02860 Oryza glumaepatula OGLUM01G02860 I 0.752
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.743
Traes_4BL_F6827247E Triticum aestivum Traes_4BL_F6827247E N 0.739
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.733
OB10G24100 Oryza brachyantha OB10G24100 N 0.731
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.730
Traes_3AS_D8AE0A149 Triticum aestivum Traes_3AS_D8AE0A149 N 0.729
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.723
OB01G36520 Oryza brachyantha OB01G36520 I 0.722
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.722
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.720
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.720
mgf023686m Mimulus guttatus mgf023686m I 0.720
TRIUR3_06598 Triticum urartu TRIUR3_06598 N 0.711
F775_20738 Aegilops tauschii F775_20738 I 0.710
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.703
OLONG_010584 Oryza longistaminata OLONG_010584 I 0.702
BGIOSGA031489 Oryza indica BGIOSGA031489 N 0.700
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.700
GRMZM2G082227 Zea mays GRMZM2G082227 N 0.700
LPERR10G12990 Leersia perrieri LPERR10G12990 N 0.700
OBART10G17010 Oryza barthii OBART10G17010 N 0.700
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N 0.700
ONIVA10G18740 Oryza nivara ONIVA10G18740 N 0.700
OPUNC10G16940 Oryza punctata OPUNC10G16940 N 0.700
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N 0.700
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N 0.700
OS10G0537100 Oryza sativa OS10G0537100 N 0.700
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.700