SCRT2 (Gallus gallus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGALG00000028912 T096034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.790 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.790 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.790 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.790 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.788 0.850
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.788 0.850
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.788 0.850
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.788 0.850
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.785 0.841
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.785 0.841
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.785 0.841
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.885
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000042878 C2H2 ZF 87 109
ENSGALP00000042878 C2H2 ZF 119 140
ENSGALP00000042878 C2H2 ZF 144 166
ENSGALP00000042878 C2H2 ZF 172 194
ENSGALP00000042878 C2H2 ZF 200 221

Links

Other C2H2 ZF family TFs
Other Gallus gallus TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04216 Aegilops tauschii F775_04216 N
BRADI1G72330 Brachypodium distachyon BRADI1G72330 N
MLOC_71395 Hordeum vulgare MLOC_71395 N
LPERR03G05580 Leersia perrieri LPERR03G05580 N
OBART03G06210 Oryza barthii OBART03G06210 N
OB03G16290 Oryza brachyantha OB03G16290 N
ORGLA03G0060000 Oryza glaberrima ORGLA03G0060000 N
OGLUM03G06210 Oryza glumaepatula OGLUM03G06210 N
BGIOSGA011321 Oryza indica BGIOSGA011321 N
OLONG_002463 Oryza longistaminata OLONG_002463 N
OMERI03G06040 Oryza meridionalis OMERI03G06040 N
ONIVA02G06710 Oryza nivara ONIVA02G06710 N
OPUNC03G06010 Oryza punctata OPUNC03G06010 N
ORUFI03G06050 Oryza rufipogon ORUFI03G06050 N
OS03G0184500 Oryza sativa OS03G0184500 N
Pavir.Ia04169 Panicum virgatum Pavir.Ia04169 N
Pavir.Ib00539 Panicum virgatum Pavir.Ib00539 N
Si037266m.g Setaria italica Si037266m.g N
Sb01g044910 Sorghum bicolor Sb01g044910 N
Traes_4AS_A7507A8AF Triticum aestivum Traes_4AS_A7507A8AF N
Traes_4BL_87A0339AD Triticum aestivum Traes_4BL_87A0339AD N
Traes_4DL_58F3F93CA Triticum aestivum Traes_4DL_58F3F93CA N
TRIUR3_04216 Triticum urartu TRIUR3_04216 N
GRMZM2G109480 Zea mays GRMZM2G109480 N
GRMZM2G028794 Zea mays GRMZM2G028794 N