OB01G47470 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB01G47470 T124563_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.803 0.929
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.803 0.929
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G47470.1 C2H2 ZF 368 390
OB01G47470.1 C2H2 ZF 391 416

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N
Ca_07000 Cicer arietinum Ca_07000 N
Cla001892 Citrullus lanatus Cla001892 N
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N
Cucsa.200410 Cucumis sativus Cucsa.200410 N
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N
GLYMA12G30285 Glycine max GLYMA12G30285 N
GLYMA13G39610 Glycine max GLYMA13G39610 N
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N
MLOC_23443 Hordeum vulgare MLOC_23443 N
LPERR08G20460 Leersia perrieri LPERR08G20460 N
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N
MDP0000224892 Malus domestica MDP0000224892 N
MDP0000610922 Malus domestica MDP0000610922 N
cassava27114.m1 Manihot esculenta cassava27114.m1 N
cassava28521.m1 Manihot esculenta cassava28521.m1 N
mgf025993m Mimulus guttatus mgf025993m N
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N
OBART04G02230 Oryza barthii OBART04G02230 N
OB08G30610 Oryza brachyantha OB08G30610 N
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N
BGIOSGA015622 Oryza indica BGIOSGA015622 N
BGIOSGA026480 Oryza indica BGIOSGA026480 N
OMERI04G02190 Oryza meridionalis OMERI04G02190 N
OMERI08G18590 Oryza meridionalis OMERI08G18590 N
ONIVA08G18580 Oryza nivara ONIVA08G18580 N
OPUNC04G02200 Oryza punctata OPUNC04G02200 N
OPUNC08G21710 Oryza punctata OPUNC08G21710 N
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N
OS08G0562300 Oryza sativa OS08G0562300 N
OS04G0165200 Oryza sativa OS04G0165200 N
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N
Pm001162 Prunus mume Pm001162 N
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N
Si013894m.g Setaria italica Si013894m.g N
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N
Sb07g023890 Sorghum bicolor Sb07g023890 N
TCM_041585 Theobroma cacao TCM_041585 N
TRIUR3_12142 Triticum urartu TRIUR3_12142 N