AZF3 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_800768.1 T128322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.816 0.889
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.809 0.844
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.809 0.844
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.809 0.844
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.792 0.800
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.780 0.822
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.780 0.822
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.769 0.689
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.769 0.644
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_800768.1 C2H2 ZF 74 95
scaffold_800768.1 C2H2 ZF 116 138

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12743 Aegilops tauschii F775_12743 N
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N
Bo7g117320 Brassica oleracea Bo7g117320 I
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.768
Ca_05641 Cicer arietinum Ca_05641 I 0.768
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.768
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.768
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.765
LPERR03G19190 Leersia perrieri LPERR03G19190 N
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.764
GSMUA_Achr7G20260_001 Musa acuminata GSMUA_Achr7G20260_001 N
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I
GSMUA_Achr10G31400_001 Musa acuminata GSMUA_Achr10G31400_001 N
OBART03G22560 Oryza barthii OBART03G22560 N
OBART03G22570 Oryza barthii OBART03G22570 I
OB03G31780 Oryza brachyantha OB03G31780 I
OB03G31790 Oryza brachyantha OB03G31790 N
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
BGIOSGA010468 Oryza indica BGIOSGA010468 I
BGIOSGA010470 Oryza indica BGIOSGA010470 N
BGIOSGA010469 Oryza indica BGIOSGA010469 N
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC03G21190 Oryza punctata OPUNC03G21190 N
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437200 Oryza sativa OS03G0437200 I
OS11G0340477 Oryza sativa OS11G0340477 N
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
OS03G0437100 Oryza sativa OS03G0437100 N
PDK_20s1446781g002 Phoenix dactylifera PDK_20s1446781g002 N
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I
Si037343m.g Setaria italica Si037343m.g N
Si037516m.g Setaria italica Si037516m.g N
Sb01g031920 Sorghum bicolor Sb01g031920 N
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.774
GRMZM5G883760 Zea mays GRMZM5G883760 N