TCM_039880 (Theobroma cacao)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 TCM_039880 T130201_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.932
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.932
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY32245 C2H2 ZF 133 154
EOY32245 C2H2 ZF 154 182

Links

Other C2H2 ZF family TFs
Other Theobroma cacao TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I
USF2 Anolis carolinensis ENSACAG00000010293 I
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I
USF2 Bos taurus ENSBTAG00000017035 I
USF2 Callithrix jacchus ENSCJAG00000010451 I
USF2 Canis familiaris ENSCAFG00000007054 I
USF2 Cavia porcellus ENSCPOG00000012147 I
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I
usf2 Danio rerio ENSDARG00000020228 I
USF2 Dasypus novemcinctus ENSDNOG00000003072 I
USF2 Equus caballus ENSECAG00000008583 I
USF2 Felis catus ENSFCAG00000008894 I
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I
usf1 Gasterosteus aculeatus ENSGACG00000005115 I
USF2 Gasterosteus aculeatus ENSGACG00000012475 I
USF2 Homo sapiens ENSG00000105698 D
ENSSTOG00000022219 Ictidomys tridecemlineatus ENSSTOG00000022219 I
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I
USF2 Loxodonta africana ENSLAFG00000029360 I
USF2 Macaca mulatta ENSMMUG00000011291 I
USF2 Microcebus murinus ENSMICG00000001519 I
USF2 Monodelphis domestica ENSMODG00000013843 I
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I
Usf2 Mus musculus ENSMUSG00000058239 D
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I
Myotis_brandtii_USF2_10034396 Myotis brandtii Myotis_brandtii_USF2_10034396 I
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I
Ogr06118 Ophisaurus gracilis Ogr06118 I
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I
USF2 Oryzias latipes ENSORLG00000015114 I
usf1 Oryzias latipes ENSORLG00000015402 I
USF2 Otolemur garnettii ENSOGAG00000001476 I
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I
USF2 Pan troglodytes ENSPTRG00000010836 I
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I
Pvit_11612 Pogona vitticeps Pvit_11612 I
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I
USF2 Procavia capensis ENSPCAG00000013941 I
Usf2 Rattus norvegicus ENSRNOG00000053725 I
USF2 Sus scrofa ENSSSCG00000002885 I
usf1 Takifugu rubripes ENSTRUG00000005343 I
USF2 Takifugu rubripes ENSTRUG00000005182 I
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I
usf2.S Xenopus laevis XB-GENE-6253011 I
usf2.L Xenopus laevis XB-GENE-991248 I
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I