Cla002614 (Citrullus lanatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cla002614 T133926_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla002614 C2H2 ZF 593 616
Cla002614 C2H2 ZF 617 640
Cla002614 C2H2 ZF 646 670
Cla002614 C2H2 ZF 676 702

Links

Other C2H2 ZF family TFs
Other Citrullus lanatus TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32229 Aegilops tauschii F775_32229 N
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N
SIGA Arabidopsis lyrata scaffold_200883.1 N
SIGA Arabidopsis thaliana AT1G64860 N
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N
Bo2g097550 Brassica oleracea Bo2g097550 N
Bra008513 Brassica rapa Bra008513 N
PK03826.1 Cannabis sativa PK03826.1 N
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N
Carubv10020145m.g Capsella rubella Carubv10020145m.g N
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N
Ca_22625 Cicer arietinum Ca_22625 N
Ca_22622 Cicer arietinum Ca_22622 N
Cla006897 Citrullus lanatus Cla006897 N
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N
Cucsa.073340 Cucumis sativus Cucsa.073340 N
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N
GLYMA09G35750 Glycine max GLYMA09G35750 N
GLYMA12G01600 Glycine max GLYMA12G01600 N
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N
LPERR08G03850 Leersia perrieri LPERR08G03850 N
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N
MDP0000939377 Malus domestica MDP0000939377 N
MDP0000934360 Malus domestica MDP0000934360 N
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N
mgf004750m Mimulus guttatus mgf004750m N
mgf016433m Mimulus guttatus mgf016433m N
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N
OBART08G03910 Oryza barthii OBART08G03910 N
OB08G14150 Oryza brachyantha OB08G14150 N
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N
BGIOSGA028041 Oryza indica BGIOSGA028041 N
OLONG_000145 Oryza longistaminata OLONG_000145 N
OMERI08G04040 Oryza meridionalis OMERI08G04040 N
ONIVA08G03880 Oryza nivara ONIVA08G03880 N
OPUNC08G03810 Oryza punctata OPUNC08G03810 N
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N
OS08G0163400 Oryza sativa OS08G0163400 N
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N
Pavir.J39657 Panicum virgatum Pavir.J39657 N
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N
Pm019567 Prunus mume Pm019567 N
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N
30148.m001468 Ricinus communis 30148.m001468 N
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N
Si013608m.g Setaria italica Si013608m.g N
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N
Sb07g004340 Sorghum bicolor Sb07g004340 N
TCM_025640 Theobroma cacao TCM_025640 N
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N
TRIUR3_34525 Triticum urartu TRIUR3_34525 N
SIGA Vitis vinifera VIT_16s0039g00660 N
GRMZM2G543629 Zea mays GRMZM2G543629 N
GRMZM2G006736 Zea mays GRMZM2G006736 N