Gfo_R004393 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004393 T135707_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp740
M00784_2.00 		Mus musculus
MCCCCCCNHN
NDNGGGGGGK		 PBM
Weirauch et al.(2013)
pTH2857 		0.820 0.926
Zfp740
M00143_2.00 		Mus musculus
HMCCCCCNNN
NNNGGGGGKD		 PBM
Badis et al.(2009)
Zfp740_0925 		0.820 0.926
Zfp740
M02935_2.00 		Mus musculus
NCCCCCCCAH
DTGGGGGGGN		 SELEX
Jolma et al.(2013)
Zfp740_1 		0.820 0.926
ZNF740
M02891_2.00 		Homo sapiens
VCCCCCCCMY
RKGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_1 		0.804 0.926
ZNF740
M02892_2.00 		Homo sapiens
VCCCCCCCAY
RTGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_2 		0.804 0.926
ZNF740
M04467_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX 		0.804 0.926
ZNF740
M04469_2.00 		Homo sapiens
NYNCCCCCCCCAC
GTGGGGGGGGNRN		 SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX 		0.804 0.926
ZNF740
M10221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF740_02 		0.804 0.926
ZNF740
M04468_2.00 		Homo sapiens
YYDCCCCCCCCAY
RTGGGGGGGGHRR		 SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX 		0.804 0.926
ZNF740
M04470_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX 		0.804 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004393 C2H2 ZF 16 38
Gfo_R004393 C2H2 ZF 44 66
Gfo_R004393 C2H2 ZF 72 93

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG008952.1 Alligator sinensis Alligator_sinensis_CCG008952.1 I
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I
Afo_R013473 Aptenodytes forsteri Afo_R013473 I
Afo_R001109 Aptenodytes forsteri Afo_R001109 I
ENSAMXG00000024918 Astyanax mexicanus ENSAMXG00000024918 I
HIC2 Bos taurus ENSBTAG00000005951 I
Brh_R005582 Buceros rhinoceros Brh_R005582 I
Aan_R008211 Calypte anna Aan_R008211 I
Aan_R003503 Calypte anna Aan_R003503 I
HIC2 Canis familiaris ENSCAFG00000032493 I
HIC2 Cavia porcellus ENSCPOG00000001134 I
HIC1 Cavia porcellus ENSCPOG00000020382 I
Cmyd_10017824 Chelonia mydas Cmyd_10017824 I
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I
hic2 Danio rerio ENSDARG00000100497 I
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I
HIC2 Felis catus ENSFCAG00000023903 I
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I
hic1l Gasterosteus aculeatus ENSGACG00000004268 I
hic1 Gasterosteus aculeatus ENSGACG00000010848 I
Gfo_R010813 Geospiza fortis Gfo_R010813 I
HIC2 Gorilla gorilla ENSGGOG00000006041 I
HIC2 Homo sapiens ENSG00000169635 D
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I
ENSP00000384889 Macaca fascicularis ENSP00000384889 I
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I
HIC2 Meleagris gallopavo ENSMGAG00000000949 I
HIC2 Microcebus murinus ENSMICG00000005154 I
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I
Hic2 Mus musculus ENSMUSG00000050240 I
Hic1 Mus musculus ENSMUSG00000043099 D
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I
HIC2 Myotis lucifugus ENSMLUG00000009669 I
Ogr08090 Ophisaurus gracilis Ogr08090 I
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I
hic1 Oryzias latipes ENSORLG00000004895 I
HIC2 Otolemur garnettii ENSOGAG00000030274 I
HIC2 Pan troglodytes ENSPTRG00000014112 I
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I
Pvit_18806 Pogona vitticeps Pvit_18806 I
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I
HIC2 Procavia capensis ENSPCAG00000015907 I
HIC2 Pteropus vampyrus ENSPVAG00000000111 I
Hic2 Rattus norvegicus ENSRNOG00000051458 I
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I
HIC2 Taeniopygia guttata ENSTGUG00000008699 I
HIC1 Taeniopygia guttata ENSTGUG00000005835 I
hic1l Takifugu rubripes ENSTRUG00000013139 I
hic1 Takifugu rubripes ENSTRUG00000004590 I
Tal_R003180 Tyto alba Tal_R003180 I
hic2 Xenopus tropicalis XB-GENE-960044 I
XP_002937184 Xenopus tropicalis XP_002937184 I
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I