Pm001162 (Prunus mume)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pm001162 T136786_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pm001162 C2H2 ZF 327 349
Pm001162 C2H2 ZF 350 375

Links

Other C2H2 ZF family TFs
Other Prunus mume TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N 0.802
Aquca_009_01096 Aquilegia coerulea Aquca_009_01096 N 0.773
BRADI3G12490 Brachypodium distachyon BRADI3G12490 N 0.768
Ca_07000 Cicer arietinum Ca_07000 N 0.817
Cla001892 Citrullus lanatus Cla001892 N 0.821
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N 0.827
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N 0.827
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N 0.827
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N 0.827
Cucsa.200410 Cucumis sativus Cucsa.200410 N 0.821
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N 0.817
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N 0.827
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N 0.827
GLYMA12G08680 Glycine max GLYMA12G08680 N 0.792
GLYMA12G30285 Glycine max GLYMA12G30285 N 0.827
GLYMA13G39610 Glycine max GLYMA13G39610 N 0.821
GLYMA11G19810 Glycine max GLYMA11G19810 N 0.778
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N 0.827
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N 0.825
LPERR08G20460 Leersia perrieri LPERR08G20460 N 0.778
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N 0.818
MDP0000224892 Malus domestica MDP0000224892 N 0.827
MDP0000610922 Malus domestica MDP0000610922 N 0.827
cassava28521.m1 Manihot esculenta cassava28521.m1 N 0.827
cassava27114.m1 Manihot esculenta cassava27114.m1 N 0.827
mgf025993m Mimulus guttatus mgf025993m N 0.827
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N 0.811
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N 0.822
OBART04G02230 Oryza barthii OBART04G02230 N 0.822
OB08G30610 Oryza brachyantha OB08G30610 N 0.778
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N 0.822
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N 0.768
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N 0.792
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N 0.822
BGIOSGA015622 Oryza indica BGIOSGA015622 N 0.822
BGIOSGA026480 Oryza indica BGIOSGA026480 N 0.768
OLONG_023180 Oryza longistaminata OLONG_023180 N 0.768
OMERI04G02190 Oryza meridionalis OMERI04G02190 N 0.822
OMERI08G18590 Oryza meridionalis OMERI08G18590 N 0.768
ONIVA08G18580 Oryza nivara ONIVA08G18580 N 0.822
OPUNC04G02200 Oryza punctata OPUNC04G02200 N 0.822
OPUNC08G21710 Oryza punctata OPUNC08G21710 N 0.778
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N 0.792
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N 0.822
OS08G0562300 Oryza sativa OS08G0562300 N 0.768
OS04G0165200 Oryza sativa OS04G0165200 N 0.822
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N 0.768
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N 0.768
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N 0.827
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N 0.827
29589.m001269 Ricinus communis 29589.m001269 N 0.811
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N 0.827
Si013894m.g Setaria italica Si013894m.g N 0.778
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N 0.817
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N 0.817
Sb07g023890 Sorghum bicolor Sb07g023890 N 0.778
TCM_041585 Theobroma cacao TCM_041585 N 0.827
TRIUR3_12142 Triticum urartu TRIUR3_12142 N 0.768
VIT_06s0061g00780 Vitis vinifera VIT_06s0061g00780 N 0.803