Pvit_03702 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_03702 T136993_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.825 0.993
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.825 0.993
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_03702 C2H2 ZF 145 167
Pvit_03702 C2H2 ZF 209 230
Pvit_03702 C2H2 ZF 236 258
Pvit_03702 C2H2 ZF 266 289
Pvit_03702 C2H2 ZF 295 317
Pvit_03702 C2H2 ZF 349 371

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00154 Aquilegia coerulea Aquca_010_00154 N
AT2G44730 Arabidopsis thaliana AT2G44730 N
Bostr.25993s0300 Boechera stricta Bostr.25993s0300 N
BRADI3G38680 Brachypodium distachyon BRADI3G38680 N
Bo3g037360 Brassica oleracea Bo3g037360 N
Bra000360 Brassica rapa Bra000360 N
PK17306.1 Cannabis sativa PK17306.1 N
Cagra.0239s0022 Capsella grandiflora Cagra.0239s0022 N
Carubv10025047m.g Capsella rubella Carubv10025047m.g N
evm.TU.supercontig_41.83 Carica papaya evm.TU.supercontig_41.83 N
Ciclev10020863m.g Citrus clementina Ciclev10020863m.g N
orange1.1g018620m.g Citrus sinensis orange1.1g018620m.g N
Thhalv10001488m.g Eutrema salsugineum Thhalv10001488m.g N
Gorai.004G167100 Gossypium raimondii Gorai.004G167100 N
MLOC_51079 Hordeum vulgare MLOC_51079 N
LPERR08G15410 Leersia perrieri LPERR08G15410 N
GSMUA_Achr6G04170_001 Musa acuminata GSMUA_Achr6G04170_001 N
Pavir.J15698 Panicum virgatum Pavir.J15698 N
POPTR_0002s14030 Populus trichocarpa POPTR_0002s14030 N
POPTR_0014s05010 Populus trichocarpa POPTR_0014s05010 N
PRUPE_ppa010055mg Prunus persica PRUPE_ppa010055mg N
29709.m001180 Ricinus communis 29709.m001180 N
SapurV1A.0033s0070 Salix purpurea SapurV1A.0033s0070 N
Si014062m.g Setaria italica Si014062m.g N
Sb07g029070 Sorghum bicolor Sb07g029070 N
TCM_005773 Theobroma cacao TCM_005773 N
Traes_5BL_81FD6E89B Triticum aestivum Traes_5BL_81FD6E89B N
VIT_07s0005g06670 Vitis vinifera VIT_07s0005g06670 N
GRMZM5G850092 Zea mays GRMZM5G850092 N