Cagra.3166s0007 (Capsella grandiflora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cagra.3166s0007 T142665_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.774 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3166s0007.1.p C2H2 ZF 38 60

Links

Other C2H2 ZF family TFs
Other Capsella grandiflora TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAM009299 Anopheles maculatus AMAM009299 I 0.000
Brh_R009827 Buceros rhinoceros Brh_R009827 I 0.000
ENSDNOG00000046180 Dasypus novemcinctus ENSDNOG00000046180 I 0.000
ENSDORG00000005303 Dipodomys ordii ENSDORG00000005303 I 0.000
ENSGMOG00000000005 Gadus morhua ENSGMOG00000000005 I 0.000
GPUH_0000960301 Gongylonema pulchrum GPUH_0000960301 I 0.000
POU2F2 Homo sapiens ENSG00000028277 D 0.000
augustus_masked-nMf.1.1.scaf20785-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf20785-processed-gene-0.0 N 0.000
augustus_masked-nMf.1.1.scaf21308-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21308-processed-gene-0.0 N 0.000
Pou3f3 Mus musculus ENSMUSG00000045515 D 0.000
ENSMLUG00000001011 Myotis lucifugus ENSMLUG00000001011 I 0.000
OESDEN_22180 Oesophagostomum dentatum OESDEN_22180 I 0.000
ENSORLG00000014257 Oryzias latipes ENSORLG00000014257 I 0.000
pou3f3b Oryzias latipes ENSORLG00000001901 I 0.000
POU2F3 Pan troglodytes ENSPTRG00000004391 I 0.000
ENSPPYG00000003972 Pongo abelii ENSPPYG00000003972 I 0.000
scaffold518-EXSNAP2012.7 Pristionchus exspectatus scaffold518-EXSNAP2012.7 N 0.000
POU2F2 Pteropus vampyrus ENSPVAG00000010621 I 0.000
ENSSARG00000008273 Sorex araneus ENSSARG00000008273 I 0.000
ENSTSYG00000009143 Tarsius syrichta ENSTSYG00000009143 I 0.000
TELCIR_24859 Teladorsagia circumcincta TELCIR_24859 I 0.000
pou5f3 Tetraodon nigroviridis ENSTNIG00000003465 I 0.000