Carubv10001157m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10001157m.g T142691_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001157m C2H2 ZF 79 103
Carubv10001157m C2H2 ZF 108 132
Carubv10001157m C2H2 ZF 138 162
Carubv10001157m C2H2 ZF 168 193
Carubv10001157m C2H2 ZF 230 255

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Z519_10016 Cladophialophora bantiana Z519_10016 N
PV07_07869 Cladophialophora immunda PV07_07869 N
A1O5_03166 Cladophialophora psammophila A1O5_03166 N
HMPREF1541_00402 Cyphellophora europaea HMPREF1541_00402 N
A1O9_10118 Exophiala aquamarina A1O9_10118 N
PV10_00131 Exophiala mesophila PV10_00131 N
PV06_04553 Exophiala oligosperma PV06_04553 N
PV05_01512 Exophiala xenobiotica PV05_01512 N
Z517_11856 Fonsecaea pedrosoi Z517_11856 N
Z518_10020 Rhinocladiella mackenziei Z518_10020 N