Lus10023433.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10023433.g T143126_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.780 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.780 0.761
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.770 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.765 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.765 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.765 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10023433 C2H2 ZF 44 66
Lus10023433 C2H2 ZF 98 120

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000016851 Ailuropoda melanoleuca ENSAMEG00000016851 I 0.000
ENSACAG00000022533 Anolis carolinensis ENSACAG00000022533 I 0.000
ENSBTAP00000001420-D1 Bos grunniens ENSBTAP00000001420-D1 I 0.000
TP53 Bos taurus ENSBTAG00000001069 I 0.000
TP53 Callithrix jacchus ENSCJAG00000014978 I 0.000
TP53 Canis familiaris ENSCAFG00000016714 I 0.000
TP53 Cavia porcellus ENSCPOG00000014252 I 0.000
Cmyd_10000491 Chelonia mydas Cmyd_10000491 I 0.000
ENSCSAG00000011345 Chlorocebus sabaeus ENSCSAG00000011345 I 0.000
tp53 Danio rerio ENSDARG00000035559 I 0.000
TP53 Dasypus novemcinctus ENSDNOG00000005252 I 0.000
ENSETEG00000008987 Echinops telfairi ENSETEG00000008987 I 0.000
TP53 Equus caballus ENSECAG00000008126 I 0.000
TP53 Erinaceus europaeus ENSEEUG00000014573 I 0.000
TP53 Felis catus ENSFCAG00000009623 I 0.000
TP53 Gorilla gorilla ENSGGOG00000009786 I 0.000
TP53 Homo sapiens ENSG00000141510 D 0.000
ENSSTOG00000022774 Ictidomys tridecemlineatus ENSSTOG00000022774 I 0.000
ENSLAFG00000028692 Loxodonta africana ENSLAFG00000028692 I 0.000
ENSLAFG00000030555 Loxodonta africana ENSLAFG00000030555 I 0.000
ENSLAFG00000030880 Loxodonta africana ENSLAFG00000030880 I 0.000
ENSLAFG00000032042 Loxodonta africana ENSLAFG00000032042 I 0.000
ENSLAFG00000028299 Loxodonta africana ENSLAFG00000028299 I 0.000
ENSLAFG00000027365 Loxodonta africana ENSLAFG00000027365 I 0.000
ENSLAFG00000007483 Loxodonta africana ENSLAFG00000007483 I 0.000
ENSP00000269305 Macaca fascicularis ENSP00000269305 I 0.000
TP53 Macaca mulatta ENSMMUG00000008639 I 0.000
ENSMEUG00000013135 Macropus eugenii ENSMEUG00000013135 I 0.000
TP53 Microcebus murinus ENSMICG00000014853 I 0.000
ENSMPUG00000009017 Mustela putorius furo ENSMPUG00000009017 I 0.000
Trp53 Mus musculus ENSMUSG00000059552 D 0.000
Myotis_brandtii_TP53_10021059 Myotis brandtii Myotis_brandtii_TP53_10021059 I 0.000
ENSMLUG00000006411 Myotis lucifugus ENSMLUG00000006411 I 0.000
ENSMLUG00000025140 Myotis lucifugus ENSMLUG00000025140 I 0.000
ENSNLEG00000009730 Nomascus leucogenys ENSNLEG00000009730 I 0.000
TP53 Ochotona princeps ENSOPRG00000006441 I 0.000
ENSOCUG00000022109 Oryctolagus cuniculus ENSOCUG00000022109 I 0.000
ENSOCUG00000001138 Oryctolagus cuniculus ENSOCUG00000001138 I 0.000
TP53 Otolemur garnettii ENSOGAG00000016871 I 0.000
ENSOARG00000015571 Ovis aries ENSOARG00000015571 I 0.000
TP53 Pan troglodytes ENSPTRG00000008703 I 0.000
ENSPSIG00000013302 Pelodiscus sinensis ENSPSIG00000013302 I 0.000
ENSPPYG00000007934 Pongo abelii ENSPPYG00000007934 I 0.000
TP53 Procavia capensis ENSPCAG00000012725 I 0.000
Tp53 Rattus norvegicus ENSRNOG00000010756 I 0.000
LOC100910954 Rattus norvegicus ENSRNOG00000046657 I 0.000
ENSSHAG00000015510 Sarcophilus harrisii ENSSHAG00000015510 I 0.000
TP53 Sorex araneus ENSSARG00000006206 I 0.000
TP53 Sus scrofa ENSSSCG00000017950 I 0.000
TP53 Tursiops truncatus ENSTTRG00000010250 I 0.000