Pavir.Fb02219 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Fb02219 T143358_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb02219.1.p C2H2 ZF 334 360
Pavir.Fb02219.1.p C2H2 ZF 356 386

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N 0.774
Ca_07000 Cicer arietinum Ca_07000 N 0.768
Cla001892 Citrullus lanatus Cla001892 N 0.762
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N 0.768
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N 0.768
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N 0.768
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N 0.768
Cucsa.200410 Cucumis sativus Cucsa.200410 N 0.762
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N 0.768
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N 0.768
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N 0.768
GLYMA12G30285 Glycine max GLYMA12G30285 N 0.768
GLYMA13G39610 Glycine max GLYMA13G39610 N 0.786
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N 0.768
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N 0.766
MLOC_23443 Hordeum vulgare MLOC_23443 N 0.784
LPERR08G20460 Leersia perrieri LPERR08G20460 N 0.798
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N 0.759
MDP0000224892 Malus domestica MDP0000224892 N 0.768
MDP0000610922 Malus domestica MDP0000610922 N 0.768
cassava27114.m1 Manihot esculenta cassava27114.m1 N 0.768
cassava28521.m1 Manihot esculenta cassava28521.m1 N 0.768
mgf025993m Mimulus guttatus mgf025993m N 0.768
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N 0.774
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N 0.783
OBART04G02230 Oryza barthii OBART04G02230 N 0.768
OB08G30610 Oryza brachyantha OB08G30610 N 0.798
ORGLA08G0191700 Oryza glaberrima ORGLA08G0191700 N 0.827
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N 0.768
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N 0.768
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N 0.803
BGIOSGA015622 Oryza indica BGIOSGA015622 N 0.768
BGIOSGA026480 Oryza indica BGIOSGA026480 N 0.827
OLONG_023180 Oryza longistaminata OLONG_023180 N 0.827
OMERI04G02190 Oryza meridionalis OMERI04G02190 N 0.768
OMERI08G18590 Oryza meridionalis OMERI08G18590 N 0.827
ONIVA08G18580 Oryza nivara ONIVA08G18580 N 0.768
OPUNC04G02200 Oryza punctata OPUNC04G02200 N 0.768
OPUNC08G21710 Oryza punctata OPUNC08G21710 N 0.817
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N 0.803
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N 0.768
OS08G0562300 Oryza sativa OS08G0562300 N 0.827
OS04G0165200 Oryza sativa OS04G0165200 N 0.768
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N 0.827
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N 0.768
Pm001162 Prunus mume Pm001162 N 0.768
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N 0.768
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N 0.768
Si013894m.g Setaria italica Si013894m.g N 0.817
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N 0.778
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N 0.778
Sb07g023890 Sorghum bicolor Sb07g023890 N 0.798
TCM_041585 Theobroma cacao TCM_041585 N 0.768
TRIUR3_12142 Triticum urartu TRIUR3_12142 N 0.807