Pavir.J38242 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J38242 T143434_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38242.1.p C2H2 ZF 496 519
Pavir.J38242.1.p C2H2 ZF 520 543
Pavir.J38242.1.p C2H2 ZF 549 573
Pavir.J38242.1.p C2H2 ZF 579 602

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_18231 Aegilops tauschii F775_18231 I
F775_20725 Aegilops tauschii F775_20725 I
F775_25665 Aegilops tauschii F775_25665 I
F775_27569 Aegilops tauschii F775_27569 I
F775_29501 Aegilops tauschii F775_29501 I
F775_30010 Aegilops tauschii F775_30010 I
F775_32664 Aegilops tauschii F775_32664 I
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I
ATMYB72 Arabidopsis lyrata fgenesh2_kg.1__4638__AT1G56160.1 I
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I
ATMYB13 Arabidopsis thaliana AT1G06180 D
MYB58 Arabidopsis thaliana AT1G16490 D
ATMYB72 Arabidopsis thaliana AT1G56160 I
ATMYB63 Arabidopsis thaliana AT1G79180 D
MYB14 Arabidopsis thaliana AT2G31180 I
AtMYB10 Arabidopsis thaliana AT3G12820 D
MYB15 Arabidopsis thaliana AT3G23250 D
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I
Bostr.3640s0057 Boechera stricta Bostr.3640s0057 I
Bostr.6758s0073 Boechera stricta Bostr.6758s0073 I
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I
BRADI3G28830 Brachypodium distachyon BRADI3G28830 I
BRADI3G49180 Brachypodium distachyon BRADI3G49180 I
BRADI5G15760 Brachypodium distachyon BRADI5G15760 I
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I
Bo1g102190 Brassica oleracea Bo1g102190 I
Bo3g025100 Brassica oleracea Bo3g025100 I
Bo3g081700 Brassica oleracea Bo3g081700 I
Bo3g185830 Brassica oleracea Bo3g185830 I
Bo4g176020 Brassica oleracea Bo4g176020 I
Bo4g176030 Brassica oleracea Bo4g176030 I
Bo5g007320 Brassica oleracea Bo5g007320 I
Bo6g081140 Brassica oleracea Bo6g081140 I
Bo6g122640 Brassica oleracea Bo6g122640 I
Bo7g040780 Brassica oleracea Bo7g040780 I
Bo8g105490 Brassica oleracea Bo8g105490 I
Bra001907 Brassica rapa Bra001907 I
Bra003619 Brassica rapa Bra003619 I
Bra014929 Brassica rapa Bra014929 I
Bra015481 Brassica rapa Bra015481 I
Bra018267 Brassica rapa Bra018267 I
Bra021708 Brassica rapa Bra021708 I
Bra022831 Brassica rapa Bra022831 I
Bra023742 Brassica rapa Bra023742 I
Bra026720 Brassica rapa Bra026720 I
Bra030812 Brassica rapa Bra030812 I
Bra039344 Brassica rapa Bra039344 I
PK03488.1 Cannabis sativa PK03488.1 I
PK08038.1 Cannabis sativa PK08038.1 I
PK20358.1 Cannabis sativa PK20358.1 I
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I
Cagra.0998s0005 Capsella grandiflora Cagra.0998s0005 I
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I
Cagra.5641s0047 Capsella grandiflora Cagra.5641s0047 I
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I
Carubv10003283m.g Capsella rubella Carubv10003283m.g I
Carubv10011190m.g Capsella rubella Carubv10011190m.g I
Carubv10015750m.g Capsella rubella Carubv10015750m.g I
Carubv10016289m.g Capsella rubella Carubv10016289m.g I
Carubv10020691m.g Capsella rubella Carubv10020691m.g I
Carubv10023905m.g Capsella rubella Carubv10023905m.g I
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I
Ca_12130 Cicer arietinum Ca_12130 I
Ca_12226 Cicer arietinum Ca_12226 I
Cla006077 Citrullus lanatus Cla006077 I
Cla007705 Citrullus lanatus Cla007705 I
Cla013669 Citrullus lanatus Cla013669 I
Cla021845 Citrullus lanatus Cla021845 I
Ciclev10005102m.g Citrus clementina Ciclev10005102m.g I
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I
Ciclev10022057m.g Citrus clementina Ciclev10022057m.g I
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I
orange1.1g045411m.g Citrus sinensis orange1.1g045411m.g I
Cucsa.053600 Cucumis sativus Cucsa.053600 I
Cucsa.118450 Cucumis sativus Cucsa.118450 I
Cucsa.383620 Cucumis sativus Cucsa.383620 I
Cucsa.388490 Cucumis sativus Cucsa.388490 I
Eucgr.B02144 Eucalyptus grandis Eucgr.B02144 I
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I
Thhalv10012163m.g Eutrema salsugineum Thhalv10012163m.g I
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I
Thhalv10018933m.g Eutrema salsugineum Thhalv10018933m.g I
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I
gene08084-v1.0-hybrid Fragaria vesca gene08084-v1.0-hybrid I
gene11462-v1.0-hybrid Fragaria vesca gene11462-v1.0-hybrid I
gene29961-v1.0-hybrid Fragaria vesca gene29961-v1.0-hybrid I
GLYMA03G31980 Glycine max GLYMA03G31980 I
GLYMA03G41100 Glycine max GLYMA03G41100 I
GLYMA08G17861 Glycine max GLYMA08G17861 I
GLYMA10G32410 Glycine max GLYMA10G32410 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA15G41255 Glycine max GLYMA15G41255 I
GLYMA19G34740 Glycine max GLYMA19G34740 I
GLYMA19G43740 Glycine max GLYMA19G43740 I
GLYMA20G35180 Glycine max GLYMA20G35180 I
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I
Gorai.004G269400 Gossypium raimondii Gorai.004G269400 I
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I
Gorai.013G088200 Gossypium raimondii Gorai.013G088200 I
MLOC_34646 Hordeum vulgare MLOC_34646 I
MLOC_43806 Hordeum vulgare MLOC_43806 I
MLOC_53640 Hordeum vulgare MLOC_53640 I
Lus10003557.g Linum usitatissimum Lus10003557.g I
Lus10011820.g Linum usitatissimum Lus10011820.g I
Lus10021185.g Linum usitatissimum Lus10021185.g I
Lus10021871.g Linum usitatissimum Lus10021871.g I
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10033889.g Linum usitatissimum Lus10033889.g I
Lus10041145.g Linum usitatissimum Lus10041145.g I
Lus10042561.g Linum usitatissimum Lus10042561.g I
chr1.CM0295.20.nd Lotus japonicus chr1.CM0295.20.nd I
chr5.CM0071.410.nd Lotus japonicus chr5.CM0071.410.nd I
MDP0000133542 Malus domestica MDP0000133542 I
MDP0000145050 Malus domestica MDP0000145050 I
MDP0000168728 Malus domestica MDP0000168728 I
MDP0000215675 Malus domestica MDP0000215675 I
MDP0000230141 Malus domestica MDP0000230141 I
MDP0000435315 Malus domestica MDP0000435315 I
MDP0000897594 Malus domestica MDP0000897594 I
cassava25784.m1 Manihot esculenta cassava25784.m1 I
cassava3286.m1 Manihot esculenta cassava3286.m1 I
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I
cassava38174.valid.m1 Manihot esculenta cassava38174.valid.m1 I
cassava47180.m1 Manihot esculenta cassava47180.m1 I
MTR_1g043050 Medicago truncatula MTR_1g043050 I
MTR_1g043080 Medicago truncatula MTR_1g043080 I
MTR_1g076150 Medicago truncatula MTR_1g076150 I
MTR_7g096930 Medicago truncatula MTR_7g096930 I
MTR_7g115650 Medicago truncatula MTR_7g115650 I
mgf011672m Mimulus guttatus mgf011672m I
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I
OBART02G28790 Oryza barthii OBART02G28790 I
OB0039G10010 Oryza brachyantha OB0039G10010 I
OB02G31990 Oryza brachyantha OB02G31990 I
OB02G35920 Oryza brachyantha OB02G35920 I
OB04G25860 Oryza brachyantha OB04G25860 I
OB04G30570 Oryza brachyantha OB04G30570 I
ORGLA02G0213400 Oryza glaberrima ORGLA02G0213400 I
ORGLA04G0158700 Oryza glaberrima ORGLA04G0158700 I
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I
BGIOSGA005798 Oryza indica BGIOSGA005798 I
BGIOSGA006005 Oryza indica BGIOSGA006005 I
BGIOSGA031688 Oryza indica BGIOSGA031688 I
OLONG_022853 Oryza longistaminata OLONG_022853 I
OMERI02G27850 Oryza meridionalis OMERI02G27850 I
ONIVA02G31530 Oryza nivara ONIVA02G31530 I
ONIVA04G17140 Oryza nivara ONIVA04G17140 I
ORUFI02G25970 Oryza rufipogon ORUFI02G25970 I
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I
ORUFI04G20280 Oryza rufipogon ORUFI04G20280 I
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I
MYB30 Oryza sativa OS02G0624300 I
OS02G0695200 Oryza sativa OS02G0695200 I
OS10G0478300 Oryza sativa OS10G0478300 I
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I
Pavir.Aa01310 Panicum virgatum Pavir.Aa01310 I
Pavir.Ab02340 Panicum virgatum Pavir.Ab02340 I
Pavir.Ga00752 Panicum virgatum Pavir.Ga00752 I
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I
Pavir.Gb00650 Panicum virgatum Pavir.Gb00650 I
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I
Pavir.J09313 Panicum virgatum Pavir.J09313 I
Pavir.J10932 Panicum virgatum Pavir.J10932 I
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I
POPTR_0002s03960 Populus trichocarpa POPTR_0002s03960 I
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I
POPTR_0019s03490 Populus trichocarpa POPTR_0019s03490 I
Pm009364 Prunus mume Pm009364 I
Pm011057 Prunus mume Pm011057 I
Pm020596 Prunus mume Pm020596 I
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I
PRUPE_ppa021921mg Prunus persica PRUPE_ppa021921mg I
PRUPE_ppa026315mg Prunus persica PRUPE_ppa026315mg I
30169.m006322 Ricinus communis 30169.m006322 I
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I
SapurV1A.0085s0540 Salix purpurea SapurV1A.0085s0540 I
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I
SELMODRAFT_127220 Selaginella moellendorffii SELMODRAFT_127220 I
SELMODRAFT_98669 Selaginella moellendorffii SELMODRAFT_98669 I
Si010814m.g Setaria italica Si010814m.g I
Si017704m.g Setaria italica Si017704m.g I
Si018182m.g Setaria italica Si018182m.g I
Si040527m.g Setaria italica Si040527m.g I
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I
Sb01g019270 Sorghum bicolor Sb01g019270 I
Sb04g026480 Sorghum bicolor Sb04g026480 I
Sb04g031110 Sorghum bicolor Sb04g031110 I
Sb06g022660 Sorghum bicolor Sb06g022660 I
Sb06g027180 Sorghum bicolor Sb06g027180 I
TCM_004046 Theobroma cacao TCM_004046 I
TCM_020889 Theobroma cacao TCM_020889 I
TCM_026197 Theobroma cacao TCM_026197 I
TCM_032927 Theobroma cacao TCM_032927 I
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I
Traes_2BL_0501BC320 Triticum aestivum Traes_2BL_0501BC320 I
Traes_2BL_34A0848F2 Triticum aestivum Traes_2BL_34A0848F2 I
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I
Traes_2DL_7183519F8 Triticum aestivum Traes_2DL_7183519F8 I
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I
Traes_6AL_54D562BC2 Triticum aestivum Traes_6AL_54D562BC2 I
Traes_6AL_BB730675A Triticum aestivum Traes_6AL_BB730675A I
Traes_6AL_E1D3D8DAA1 Triticum aestivum Traes_6AL_E1D3D8DAA1 I
Traes_6BL_E5A9546C9 Triticum aestivum Traes_6BL_E5A9546C9 I
Traes_6DL_2CD01D459 Triticum aestivum Traes_6DL_2CD01D459 I
Traes_6DL_991931CF9 Triticum aestivum Traes_6DL_991931CF9 I
Traes_6DL_BBAC725C3 Triticum aestivum Traes_6DL_BBAC725C3 I
Traes_6DL_FCDEB9A8B Triticum aestivum Traes_6DL_FCDEB9A8B I
TRIUR3_12301 Triticum urartu TRIUR3_12301 I
TRIUR3_12302 Triticum urartu TRIUR3_12302 I
TRIUR3_18702 Triticum urartu TRIUR3_18702 I
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I
AC206901.3_FG005 Zea mays AC206901.3_FG005 I
GRMZM2G048295 Zea mays GRMZM2G048295 I
GRMZM2G095904 Zea mays GRMZM2G095904 I
GRMZM2G097636 Zea mays GRMZM2G097636 I
GRMZM2G097638 Zea mays GRMZM2G097638 I
GRMZM2G127857 Zea mays GRMZM2G127857 I
GRMZM2G147346 Zea mays GRMZM2G147346 I
GRMZM5G833253 Zea mays GRMZM5G833253 I