PK27255.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK27255.1 T144921_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.848
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.848
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27255.1 C2H2 ZF 67 89
PK27255.1 C2H2 ZF 111 133

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

384 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_16855 Aegilops tauschii F775_16855 I
F775_24386 Aegilops tauschii F775_24386 I
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I
PAN Arabidopsis lyrata fgenesh2_kg.2__1120__AT1G68640.1 I
TGA10 Arabidopsis thaliana AT5G06839 D
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I
Bostr.26959s0025 Boechera stricta Bostr.26959s0025 I
Bo9g175780 Brassica oleracea Bo9g175780 I
Bo3g004060 Brassica oleracea Bo3g004060 I
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I
Carubv10003744m.g Capsella rubella Carubv10003744m.g I
Ciclev10031441m.g Citrus clementina Ciclev10031441m.g I
orange1.1g018357m.g Citrus sinensis orange1.1g018357m.g I
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I
GLYMA03G29825 Glycine max GLYMA03G29825 I
GLYMA19G32715 Glycine max GLYMA19G32715 I
MLOC_58614 Hordeum vulgare MLOC_58614 I
LPERR05G14450 Leersia perrieri LPERR05G14450 I
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I
OBART05G18270 Oryza barthii OBART05G18270 I
OB05G26080 Oryza brachyantha OB05G26080 I
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I
BGIOSGA019942 Oryza indica BGIOSGA019942 I
OLONG_005656 Oryza longistaminata OLONG_005656 I
OMERI05G15750 Oryza meridionalis OMERI05G15750 I
ONIVA05G19180 Oryza nivara ONIVA05G19180 I
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I
OS05G0443900 Oryza sativa OS05G0443900 I
Pavir.Hb01807 Panicum virgatum Pavir.Hb01807 I
PDK_20s1405291g002 Phoenix dactylifera PDK_20s1405291g002 I
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I
Traes_6BS_65CDD608F Triticum aestivum Traes_6BS_65CDD608F I
Traes_6DS_FD90D1145 Triticum aestivum Traes_6DS_FD90D1145 I
Traes_6AS_9916DDE4D Triticum aestivum Traes_6AS_9916DDE4D I
Traes_1DS_0CFC1995D Triticum aestivum Traes_1DS_0CFC1995D I
Traes_1AL_3B659AABA Triticum aestivum Traes_1AL_3B659AABA I
GRMZM2G029979 Zea mays GRMZM2G029979 I