CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002937184
(
Xenopus tropicalis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XP_002937184
T145774_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN
NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.823
0.983
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.823
0.983
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN
NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.823
0.983
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH
DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.823
0.983
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN
NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.799
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002937184
C2H2 ZF
387
409
YVCIPCGKGFPSSEQLNAHVEAH
XP_002937184
C2H2 ZF
441
463
YRCSSCDKSYKDPATLRQHEKTH
XP_002937184
C2H2 ZF
469
491
YPCNICGKKFTQRGTMTRHMRSH
XP_002937184
C2H2 ZF
497
519
FACDACGMRFTRQYRLTEHMRIH
XP_002937184
C2H2 ZF
525
547
YECQVCGGKFAQQRNLISHMKMH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus tropicalis
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG008952.1
Alligator sinensis
Alligator_sinensis_CCG008952.1
I
0.823
Alligator_sinensis_CCG015471.1
Alligator sinensis
Alligator_sinensis_CCG015471.1
I
0.797
ENSAPLG00000002158
Anas platyrhynchos
ENSAPLG00000002158
I
0.797
HIC1
Anolis carolinensis
ENSACAG00000011777
I
0.767
Afo_R001109
Aptenodytes forsteri
Afo_R001109
I
0.797
Afo_R013473
Aptenodytes forsteri
Afo_R013473
I
0.825
HIC2
Bos taurus
ENSBTAG00000005951
I
0.783
Brh_R005582
Buceros rhinoceros
Brh_R005582
I
0.797
Aan_R003503
Calypte anna
Aan_R003503
I
0.825
Aan_R008211
Calypte anna
Aan_R008211
I
0.797
HIC2
Canis familiaris
ENSCAFG00000032493
I
0.799
HIC2
Cavia porcellus
ENSCPOG00000001134
I
0.799
HIC1
Cavia porcellus
ENSCPOG00000020382
I
0.823
Cmyd_10017824
Chelonia mydas
Cmyd_10017824
I
0.797
ENSCSAG00000013356
Chlorocebus sabaeus
ENSCSAG00000013356
I
0.799
HIC2
Dasypus novemcinctus
ENSDNOG00000003162
I
0.799
HIC2
Equus caballus
ENSECAG00000017997
I
0.799
HIC2
Felis catus
ENSFCAG00000023903
I
0.799
ENSFALG00000014495
Ficedula albicollis
ENSFALG00000014495
I
0.797
ENSFALG00000006543
Ficedula albicollis
ENSFALG00000006543
I
0.825
ENSGALG00000001403
Gallus gallus
ENSGALG00000001403
I
0.797
ENSGALG00000026718
Gallus gallus
ENSGALG00000026718
I
0.825
hic1l
Gasterosteus aculeatus
ENSGACG00000004268
I
0.791
hic1
Gasterosteus aculeatus
ENSGACG00000010848
I
0.819
Gfo_R010813
Geospiza fortis
Gfo_R010813
I
0.797
HIC2
Gorilla gorilla
ENSGGOG00000006041
I
0.799
HIC2
Homo sapiens
ENSG00000169635
D
0.799
ENSSTOG00000006360
Ictidomys tridecemlineatus
ENSSTOG00000006360
I
0.799
ENSLACG00000007028
Latimeria chalumnae
ENSLACG00000007028
I
0.825
ENSLOCG00000002169
Lepisosteus oculatus
ENSLOCG00000002169
I
0.797
ENSP00000384889
Macaca fascicularis
ENSP00000384889
I
0.799
ENSMGAG00000005397
Meleagris gallopavo
ENSMGAG00000005397
I
0.825
HIC2
Meleagris gallopavo
ENSMGAG00000000949
I
0.797
HIC2
Microcebus murinus
ENSMICG00000005154
I
0.797
ENSMPUG00000003198
Mustela putorius furo
ENSMPUG00000003198
I
0.799
Hic2
Mus musculus
ENSMUSG00000050240
I
0.799
Hic1
Mus musculus
ENSMUSG00000043099
D
0.823
Myotis_brandtii_HIC2_10021802
Myotis brandtii
Myotis_brandtii_HIC2_10021802
I
0.799
HIC2
Myotis lucifugus
ENSMLUG00000009669
I
0.799
Ogr08090
Ophisaurus gracilis
Ogr08090
I
0.797
ENSONIG00000014335
Oreochromis niloticus
ENSONIG00000014335
I
0.791
HIC2
Oryctolagus cuniculus
ENSOCUG00000010516
I
0.799
hic1
Oryzias latipes
ENSORLG00000004895
I
0.816
HIC2
Otolemur garnettii
ENSOGAG00000030274
I
0.799
HIC2
Pan troglodytes
ENSPTRG00000014112
I
0.799
ENSPANG00000024301
Papio anubis
ENSPANG00000024301
I
0.799
ENSPSIG00000007902
Pelodiscus sinensis
ENSPSIG00000007902
I
0.825
ENSPSIG00000000992
Pelodiscus sinensis
ENSPSIG00000000992
I
0.797
ENSPSIG00000000839
Pelodiscus sinensis
ENSPSIG00000000839
I
0.797
ENSPFOG00000020465
Poecilia formosa
ENSPFOG00000020465
I
0.791
Pvit_18806
Pogona vitticeps
Pvit_18806
I
0.797
ENSPPYG00000012022
Pongo abelii
ENSPPYG00000012022
I
0.799
HIC2
Procavia capensis
ENSPCAG00000015907
I
0.799
HIC2
Pteropus vampyrus
ENSPVAG00000000111
I
0.799
Hic2
Rattus norvegicus
ENSRNOG00000051458
I
0.799
ENSSSCG00000021196
Sus scrofa
ENSSSCG00000021196
I
0.799
HIC2
Taeniopygia guttata
ENSTGUG00000008699
I
0.797
HIC1
Taeniopygia guttata
ENSTGUG00000005835
I
0.825
hic1l
Takifugu rubripes
ENSTRUG00000013139
I
0.791
hic1
Takifugu rubripes
ENSTRUG00000004590
I
0.819
Tal_R003180
Tyto alba
Tal_R003180
I
0.797
hic2
Xenopus tropicalis
XB-GENE-960044
I
0.796
ENSXMAG00000020311
Xiphophorus maculatus
ENSXMAG00000020311
I
0.791