22143_YPL038W (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 22143_YPL038W T145950_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MET31
M00040_2.00 		Saccharomyces cerevisiae
NNHCACCTMN
NKAGGTGDNN		 PBM
Badis et al.(2008)
MET31_2146 		0.808 1.000
MET31
M07470_2.00 		Saccharomyces cerevisiae
MGCCACNNH
DNNGTGGCK		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0333.1 		0.808 1.000
MET31
M08543_2.00 		Saccharomyces cerevisiae
VCACWVYK
MRBWGTGB		 Misc
DeBoer et al.(2011)
YPL038W_1370 		0.808 1.000
MET31
M10402_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MET31_01 		0.808 1.000
MET32
M00022_2.00 		Saccharomyces cerevisiae
NVMGCCACAV
BTGTGGCKBN		 PBM
Badis et al.(2008)
MET32_2153 		0.763 0.775
MET32
M01528_2.00 		Saccharomyces cerevisiae
MGCCACAN
NTGTGGCK		 PBM
Zhu et al.(2009)
Met32 		0.763 0.775
MET32
M07452_2.00 		Saccharomyces cerevisiae
MGCCACM
KGTGGCK		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0334.1 		0.763 0.775
MET32
M08518_2.00 		Saccharomyces cerevisiae
VHKCCACA
TGTGGMDB		 Misc
DeBoer et al.(2011)
YDR253C_1375 		0.763 0.775
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
22143_YPL038W C2H2 ZF 89 106
22143_YPL038W C2H2 ZF 117 138

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZFP5 Arabidopsis thaliana AT1G10480 D 0.000
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.000
Bo8g109510 Brassica oleracea Bo8g109510 I 0.000
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.000
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.000
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.000
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.000
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.000
MDP0000121370 Malus domestica MDP0000121370 I 0.000
MDP0000165710 Malus domestica MDP0000165710 I 0.000
MDP0000166683 Malus domestica MDP0000166683 I 0.000
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.000
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.000
Pm008291 Prunus mume Pm008291 I 0.000
30076.m004693 Ricinus communis 30076.m004693 I 0.000
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.000
SELMODRAFT_450830 Selaginella moellendorffii SELMODRAFT_450830 I 0.000
SELMODRAFT_450817 Selaginella moellendorffii SELMODRAFT_450817 I 0.000
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.000
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.000
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.000
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.000