CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

23355_YPR015C *(Saccharomyces paradoxus)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	23355_YPR015C	T145959_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
YPR015C M01540_2.00	Saccharomyces cerevisiae	YTSBBBN	NVVVSAR	PBM Zhu et al.(2009) Ypr015c	0.827	1.000
YPR015C M08546_2.00	Saccharomyces cerevisiae	BNNNDVCGTAAATCMYNDHH	DDHNRKGATTTACGBHNNNV	Misc DeBoer et al.(2011) YPR015C_871	0.827	1.000
CMR3 M00042_2.00	Saccharomyces cerevisiae	HGTARATCN	NGATYTACD	PBM Badis et al.(2008) YPR013C_2104	0.776	0.848
CMR3 M01539_2.00	Saccharomyces cerevisiae	NGATYDRCVN	NBGYHRATCN	PBM Zhu et al.(2009) Ypr013c	0.776	0.848
CMR3 M07471_2.00	Saccharomyces cerevisiae	NGATYKRCR	YGYMRATCN	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0434.1	0.776	0.848
CMR3 M08545_2.00	Saccharomyces cerevisiae	NNNRVYGTARATCMYDNNNN	NNNNHRKGATYTACRBYNNN	Misc DeBoer et al.(2011) YPR013C_859	0.776	0.848
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
23355_YPR015C	C2H2 ZF	185	207	KQCPICGKVCSRPSTLRTHYLIH
23355_YPR015C	C2H2 ZF	213	237	FKCTWEHCNKSFNVKSNMLRHLRTH

Links
Other C2H2 ZF family TFs
Other *Saccharomyces paradoxus* TFs