CMR3 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YPR013C T131857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMR3
M00042_2.00		 Saccharomyces cerevisiae
HGTARATCN
NGATYTACD		 PBM
Badis et al.(2008)
YPR013C_2104		 (Direct) (Direct)
CMR3
M01539_2.00		 Saccharomyces cerevisiae
NGATYDRCVN
NBGYHRATCN		 PBM
Zhu et al.(2009)
Ypr013c		 (Direct) (Direct)
CMR3
M07471_2.00		 Saccharomyces cerevisiae
NGATYKRCR
YGYMRATCN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0434.1		 (Direct) (Direct)
CMR3
M08545_2.00		 Saccharomyces cerevisiae
NNNRVYGTARATCMYDNNNN
NNNNHRKGATYTACRBYNNN		 Misc
DeBoer et al.(2011)
YPR013C_859		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YPR015C
M01540_2.00 		Saccharomyces cerevisiae
YTSBBBN
NVVVSAR		 PBM
Zhu et al.(2009)
Ypr015c 		0.776 0.848
YPR015C
M08546_2.00 		Saccharomyces cerevisiae
BNNNDVCGTAAATCMYNDHH
DDHNRKGATTTACGBHNNNV		 Misc
DeBoer et al.(2011)
YPR015C_871 		0.776 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00042_2.00 C2H2 ZF 51 73
M00042_2.00 C2H2 ZF 79 103
M01539_2.00 C2H2 ZF 254 276
M01539_2.00 C2H2 ZF 282 306

DNA Binding Domains

Protein ID Domain From To Sequence
YPR013C C2H2 ZF 254 276
YPR013C C2H2 ZF 282 306

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_171403 Saccharomyces kudriavzevii SKUD_171403 I 0.827
SU7_3626 Saccharomyces arboricola SU7_3626 I 0.827
22332_YPR013C Saccharomyces mikatae 22332_YPR013C I 0.827
23365_YPR013C Saccharomyces paradoxus 23365_YPR013C I 0.827
25590_YPR013C Saccharomyces bayanus 25590_YPR013C I 0.827
KAFR_0C03140 Kazachstania africana KAFR_0C03140 I 0.822
CAGL0J01595g Candida glabrata CAGL0J01595g I 0.821
KAFR_0B01990 Kazachstania africana KAFR_0B01990 I 0.821
ZBAI_03368 Zygosaccharomyces bailii ZBAI_03368 I 0.821
ZBAI_08373 Zygosaccharomyces bailii ZBAI_08373 I 0.821
ZYRO0E02684g Zygosaccharomyces rouxii ZYRO0E02684g I 0.821
NDAI_0B02080 Naumovozyma dairenensis NDAI_0B02080 I 0.817
TDEL_0F01170 Torulaspora delbrueckii TDEL_0F01170 I 0.816
SAKL0H20416g Lachancea kluyveri SAKL0H20416g I 0.810
CAGL0L05786g Candida glabrata CAGL0L05786g I 0.806
TBLA_0E03930 Tetrapisispora blattae TBLA_0E03930 I 0.806
KAFR_0B02000 Kazachstania africana KAFR_0B02000 I 0.803
KNAG_0D02290 Kazachstania naganishii KNAG_0D02290 I 0.801
NDAI_0B01940 Naumovozyma dairenensis NDAI_0B01940 I 0.801
KNAG_0G01140 Kazachstania naganishii KNAG_0G01140 I 0.792
NCAS_0C04230 Naumovozyma castellii NCAS_0C04230 I 0.792
Scas_Contig707.46 Saccharomyces castellii Scas_Contig707.46 I 0.792
KNAG_0D02280 Kazachstania naganishii KNAG_0D02280 I 0.781
SU7_3627 Saccharomyces arboricola SU7_3627 I 0.776
YPR015C Saccharomyces cerevisiae YPR015C D 0.776
22337_YPR015C Saccharomyces mikatae 22337_YPR015C I 0.776
23355_YPR015C Saccharomyces paradoxus 23355_YPR015C I 0.776
25604_YPR015C Saccharomyces bayanus 25604_YPR015C I 0.776
NCAS_0B04660 Naumovozyma castellii NCAS_0B04660 I 0.774
KLLA0_A04609g Kluyveromyces lactis KLLA0_A04609g I 0.765