LjT09F05.130.nd (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 LjT09F05.130.nd T146385_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.789 0.804
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.789 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.766 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.760 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.756 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT09F05.130.nd C2H2 ZF 38 60
LjT09F05.130.nd C2H2 ZF 85 107

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000792 Aedes aegypti AAEL000792 I
M378DRAFT_9762 Amanita muscaria M378DRAFT_9762 N
AARA000827 Anopheles arabiensis AARA000827 I
AARA011914 Anopheles arabiensis AARA011914 I
AATE006542 Anopheles atroparvus AATE006542 N
AATE012157 Anopheles atroparvus AATE012157 N
ACHR009359 Anopheles christyi ACHR009359 I
ACOM026664 Anopheles coluzzii ACOM026664 N
ACOM034662 Anopheles coluzzii ACOM034662 I
ACUA011783 Anopheles culicifacies ACUA011783 N
ACUA026266 Anopheles culicifacies ACUA026266 I
ADIR009659 Anopheles dirus ADIR009659 I
AEPI007946 Anopheles epiroticus AEPI007946 N
AFUN009319 Anopheles funestus AFUN009319 I
AGAP012033 Anopheles gambiae AGAP012033 I
AMAM018985 Anopheles maculatus AMAM018985 I
AMEC014560 Anopheles melas AMEC014560 I
AMEC016085 Anopheles melas AMEC016085 I
AMIN001219 Anopheles minimus AMIN001219 I
AMIN008219 Anopheles minimus AMIN008219 I
AQUA004309 Anopheles quadriannulatus AQUA004309 I
ASIS016076 Anopheles sinensis ASIS016076 N
ASTEI06129 Anopheles stephensi ASTEI06129 N
GB40960 Apis mellifera GB40960 I
ACEP25270 Atta cephalotes ACEP25270 N
ACEP25857 Atta cephalotes ACEP25857 I
BGLB002734 Biomphalaria glabrata BGLB002734 I
BGLB010904 Biomphalaria glabrata BGLB010904 I
BGIBMGA004367 Bombyx mori BGIBMGA004367 I
BOTBODRAFT_575815 Botryobasidium botryosum BOTBODRAFT_575815 N
Cflo_01077--XP_001122045.1_APIME Camponotus floridanus Cflo_01077--XP_001122045.1_APIME N
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I
CC1G_07859 Coprinopsis cinerea CC1G_07859 N
CpipJ_CPIJ012500 Culex pipiens CpipJ_CPIJ012500 N
CpipJ_CPIJ014016 Culex pipiens CpipJ_CPIJ014016 N
CpipJ_CPIJ014424 Culex pipiens CpipJ_CPIJ014424 I
CPIJ012500 Culex quinquefasciatus CPIJ012500 N
CPIJ014016 Culex quinquefasciatus CPIJ014016 N
CPIJ014424 Culex quinquefasciatus CPIJ014424 I
KGM_05609 Danaus plexippus KGM_05609 N
sox9b Danio rerio ENSDARG00000043923 I
DAPPUDRAFT_37735 Daphnia pulex DAPPUDRAFT_37735 I
SOX9 Dasypus novemcinctus ENSDNOG00000033826 I
YQE_13042 Dendroctonus ponderosae YQE_13042 I
ENSDORG00000003967 Dipodomys ordii ENSDORG00000003967 I
ENSDORG00000012440 Dipodomys ordii ENSDORG00000012440 I
SOX10 Erinaceus europaeus ENSEEUG00000011263 I
ENSFALG00000002572 Ficedula albicollis ENSFALG00000002572 I
Gfo_R009506 Geospiza fortis Gfo_R009506 I
GLYMA01G28253 Glycine max GLYMA01G28253 N
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N
GYMLUDRAFT_43821 Gymnopus luxurians GYMLUDRAFT_43821 N
Hsal_04214--XP_001122045.1_APIME Harpegnathos saltator Hsal_04214--XP_001122045.1_APIME N
Hsal_04828--XP_001122993.1_APIME Harpegnathos saltator Hsal_04828--XP_001122993.1_APIME I
HMEL016850 Heliconius melpomene HMEL016850 I
HelroG148167 Helobdella robusta HelroG148167 I
HelroG148277 Helobdella robusta HelroG148277 N
HBP1 Homo sapiens ENSG00000105856 D
HYDPIDRAFT_99715 Hydnomerulius pinastri HYDPIDRAFT_99715 N
ISCW009925 Ixodes scapularis ISCW009925 I
ENSLOCG00000004648 Lepisosteus oculatus ENSLOCG00000004648 I
LDEC007549 Leptinotarsa decemlineata LDEC007549 N
LotgiG105193 Lottia gigantea LotgiG105193 N
LotgiG88815 Lottia gigantea LotgiG88815 I
SOX10 Meleagris gallopavo ENSMGAG00000012508 I
augustus_masked-nMf.1.1.scaf12176-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf12176-processed-gene-0.0 N
ML23337a Mnemiopsis leidyi ML23337a N
MPER_07337 Moniliophthora perniciosa MPER_07337 N
SOX10 Ochotona princeps ENSOPRG00000013575 I
Ocbimv22020621m.g Octopus bimaculoides Ocbimv22020621m.g N
PAXRUDRAFT_827004 Paxillus rubicundulus PAXRUDRAFT_827004 N
PHUM433270 Pediculus humanus PHUM433270 N
ENSPSIG00000009504 Pelodiscus sinensis ENSPSIG00000009504 I
ENSPMAG00000010371 Petromyzon marinus ENSPMAG00000010371 I
PHACADRAFT_58554 Phanerochaete carnosa PHACADRAFT_58554 N
PHLGIDRAFT_121875 Phlebiopsis gigantea PHLGIDRAFT_121875 N
PPAI009257 Phlebotomus papatasi PPAI009257 N
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I
POSPLDRAFT_104706 Postia placenta POSPLDRAFT_104706 N
SOX17 Procavia capensis ENSPCAG00000003188 I
SOX10 Procavia capensis ENSPCAG00000005913 I
SOX9 Pteropus vampyrus ENSPVAG00000010505 I
RSKR_0000394100 Rhabditophanes kr3021 RSKR_0000394100 N
GLOINDRAFT_28614 Rhizophagus irregularis GLOINDRAFT_28614 N
GLOINDRAFT_339213 Rhizophagus irregularis GLOINDRAFT_339213 N
GLOINDRAFT_344959 Rhizophagus irregularis GLOINDRAFT_344959 N
RO3G_05566 Rhizopus oryzae RO3G_05566 N
RPRC012125 Rhodnius prolixus RPRC012125 N
RPRC012780 Rhodnius prolixus RPRC012780 I
Smp_148110 Schistosoma mansoni Smp_148110 I
SINV16626 Solenopsis invicta SINV16626 I
SPER_0000213401 Spirometra erinaceieuropaei SPER_0000213401 N
SMAR010127 Strigamia maritima SMAR010127 N
CY34DRAFT_106474 Suillus luteus CY34DRAFT_106474 N
TPHA_0C04350 Tetrapisispora phaffii TPHA_0C04350 N
UCRPA7_3157 Togninia minima UCRPA7_3157 N
BN946_scf184985.g43 Trametes cinnabarina BN946_scf184985.g43 N
TC003791 Tribolium castaneum TC003791 I
D917_07703 Trichinella nativa D917_07703 N
EFV51436 Trichinella spiralis EFV51436 N
ENSTTRG00000005878 Tursiops truncatus ENSTTRG00000005878 I
ENSVPAG00000000908 Vicugna pacos ENSVPAG00000000908 I
XP_002935939 Xenopus tropicalis XP_002935939 I
AC186524.3_FG005 Zea mays AC186524.3_FG005 N
GRMZM2G144398 Zea mays GRMZM2G144398 N
L798_02392 Zootermopsis nevadensis L798_02392 I
L798_04020 Zootermopsis nevadensis L798_04020 N
L798_09360 Zootermopsis nevadensis L798_09360 N