ACOM031677 (Anopheles coluzzii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ACOM031677 T147687_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.809 0.956
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.809 0.956
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.809 0.956
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.809 0.956
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.795 0.921
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.795 0.921
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.795 0.921
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.781 0.833
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.781 0.833
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.781 0.833
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.781 0.833
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.772 0.816
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.772 0.816
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.772 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOM031677-PA C2H2 ZF 597 619
ACOM031677-PA C2H2 ZF 628 650
ACOM031677-PA C2H2 ZF 654 676
ACOM031677-PA C2H2 ZF 682 704
ACOM031677-PA C2H2 ZF 710 731

Links

Other C2H2 ZF family TFs
Other Anopheles coluzzii TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17625 Aegilops tauschii F775_17625 N
BRADI2G52227 Brachypodium distachyon BRADI2G52227 N
BRADI4G09197 Brachypodium distachyon BRADI4G09197 N
MLOC_74705 Hordeum vulgare MLOC_74705 N
LPERR11G20420 Leersia perrieri LPERR11G20420 N
OBART11G23670 Oryza barthii OBART11G23670 N
OB11G28090 Oryza brachyantha OB11G28090 N
ORGLA11G0190200 Oryza glaberrima ORGLA11G0190200 N
ORGLA11G0190300 Oryza glaberrima ORGLA11G0190300 N
BGIOSGA035741 Oryza indica BGIOSGA035741 N
ONIVA11G23190 Oryza nivara ONIVA11G23190 N
ORUFI11G25550 Oryza rufipogon ORUFI11G25550 N
OS11G0705200 Oryza sativa OS11G0705200 N
Pavir.Ha00317 Panicum virgatum Pavir.Ha00317 N
Pavir.Hb00044 Panicum virgatum Pavir.Hb00044 N
Si025985m.g Setaria italica Si025985m.g N
Sb05g027740 Sorghum bicolor Sb05g027740 N
Traes_4AL_FF199F127 Triticum aestivum Traes_4AL_FF199F127 N
Traes_4BS_A79538646 Triticum aestivum Traes_4BS_A79538646 N
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N
TRIUR3_21532 Triticum urartu TRIUR3_21532 N
GRMZM5G868355 Zea mays GRMZM5G868355 N
GRMZM2G163427 Zea mays GRMZM2G163427 N