BGLB009896 (Biomphalaria glabrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 BGLB009896 T150798_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.761 0.836
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.761 0.836
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.761 0.836
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.761 0.836
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGLB009896-PA C2H2 ZF 378 400
BGLB009896-PA C2H2 ZF 409 431
BGLB009896-PA C2H2 ZF 435 457
BGLB009896-PA C2H2 ZF 463 485
BGLB009896-PA C2H2 ZF 491 508

Links

Other C2H2 ZF family TFs
Other Biomphalaria glabrata TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_025_00175 Aquilegia coerulea Aquca_025_00175 N
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N
PK12746.1 Cannabis sativa PK12746.1 N
PK06148.1 Cannabis sativa PK06148.1 N
evm.TU.supercontig_151.57 Carica papaya evm.TU.supercontig_151.57 N
Ciclev10004395m.g Citrus clementina Ciclev10004395m.g N
orange1.1g004420m.g Citrus sinensis orange1.1g004420m.g N
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N
Eucgr.K03522 Eucalyptus grandis Eucgr.K03522 N
gene05172-v1.0-hybrid Fragaria vesca gene05172-v1.0-hybrid N
GLYMA09G04394 Glycine max GLYMA09G04394 N
GLYMA10G00380 Glycine max GLYMA10G00380 N
GLYMA15G15450 Glycine max GLYMA15G15450 N
Gorai.011G195800 Gossypium raimondii Gorai.011G195800 N
MLOC_15705 Hordeum vulgare MLOC_15705 N
MDP0000786741 Malus domestica MDP0000786741 N
MDP0000233216 Malus domestica MDP0000233216 N
cassava28226.m1 Manihot esculenta cassava28226.m1 N
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N
PDK_20s1635961g004 Phoenix dactylifera PDK_20s1635961g004 N
POPTR_0002s20030 Populus trichocarpa POPTR_0002s20030 N
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N
POPTR_0008s10810 Populus trichocarpa POPTR_0008s10810 N
Pm008290 Prunus mume Pm008290 N
Pm003854 Prunus mume Pm003854 N
PRUPE_ppa002003mg Prunus persica PRUPE_ppa002003mg N
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N
29685.m000503 Ricinus communis 29685.m000503 N
29889.m003255 Ricinus communis 29889.m003255 N
SapurV1A.0158s0480 Salix purpurea SapurV1A.0158s0480 N
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N
Solyc09g075640.2 Solanum lycopersicum Solyc09g075640.2 N
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N
TCM_021310 Theobroma cacao TCM_021310 N
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N
TRIUR3_11057 Triticum urartu TRIUR3_11057 N
VIT_05s0077g01400 Vitis vinifera VIT_05s0077g01400 N
VIT_07s0005g01120 Vitis vinifera VIT_07s0005g01120 N
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N