LIN28A (Choloepus hoffmanni)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCHOG00000002073 T164460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.800 0.800
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000001832 CSD 36 78

Links

Other CSD family TFs
Other Choloepus hoffmanni TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014121 Ailuropoda melanoleuca ENSAMEG00000014121 I 0.000
Alligator_sinensis_CCG002534.1 Alligator sinensis Alligator_sinensis_CCG002534.1 I 0.000
ZNF384 Anolis carolinensis ENSACAG00000006099 I 0.000
ENSAMXG00000014229 Astyanax mexicanus ENSAMXG00000014229 I 0.000
ENSBTAP00000022702-D1 Bos grunniens ENSBTAP00000022702-D1 I 0.000
ZNF384 Bos taurus ENSBTAG00000017072 I 0.000
ZNF384 Callithrix jacchus ENSCJAG00000007944 I 0.000
ZNF384 Canis familiaris ENSCAFG00000014740 I 0.000
ZNF384 Cavia porcellus ENSCPOG00000012313 N 0.000
Cmyd_10003951 Chelonia mydas Cmyd_10003951 I 0.000
ENSCSAG00000010379 Chlorocebus sabaeus ENSCSAG00000010379 I 0.000
ZNF384 Choloepus hoffmanni ENSCHOG00000006697 I 0.000
ZNF384 Dasypus novemcinctus ENSDNOG00000003936 I 0.000
ZNF384 Equus caballus ENSECAG00000009490 I 0.000
ZNF384 Erinaceus europaeus ENSEEUG00000012950 I 0.000
ZNF384 Felis catus ENSFCAG00000006882 I 0.000
ENSFALG00000004741 Ficedula albicollis ENSFALG00000004741 I 0.000
ENSGALG00000014459 Gallus gallus ENSGALG00000014459 N 0.000
ZNF384 Gorilla gorilla ENSGGOG00000016048 I 0.000
ZNF384 Homo sapiens ENSG00000126746 D 0.000
ENSSTOG00000009902 Ictidomys tridecemlineatus ENSSTOG00000009902 I 0.000
ENSLOCG00000007968 Lepisosteus oculatus ENSLOCG00000007968 I 0.000
ZNF384 Loxodonta africana ENSLAFG00000008381 I 0.000
ENSP00000380019 Macaca fascicularis ENSP00000380019 I 0.000
ZNF384 Macaca mulatta ENSMMUG00000016990 I 0.000
ZNF384 Meleagris gallopavo ENSMGAG00000014101 N 0.000
ZNF384 Monodelphis domestica ENSMODG00000018105 I 0.000
ENSMPUG00000016838 Mustela putorius furo ENSMPUG00000016838 I 0.000
Zfp384 Mus musculus ENSMUSG00000038346 I 0.000
Myotis_brandtii_ZNF384_10009390 Myotis brandtii Myotis_brandtii_ZNF384_10009390 I 0.000
ZNF384 Myotis lucifugus ENSMLUG00000013771 I 0.000
ENSNLEG00000004506 Nomascus leucogenys ENSNLEG00000004506 I 0.000
ZNF384 Ochotona princeps ENSOPRG00000003626 I 0.000
Ogr07132 Ophisaurus gracilis Ogr07132 N 0.000
Ogr12333 Ophisaurus gracilis Ogr12333 I 0.000
ENSONIG00000013041 Oreochromis niloticus ENSONIG00000013041 I 0.000
ZNF384 Oryctolagus cuniculus ENSOCUG00000003747 I 0.000
ZNF384 Otolemur garnettii ENSOGAG00000010052 I 0.000
ENSOARG00000007041 Ovis aries ENSOARG00000007041 N 0.000
ZNF384 Pan troglodytes ENSPTRG00000004584 I 0.000
ENSPANG00000014845 Papio anubis ENSPANG00000014845 I 0.000
ENSPFOG00000015360 Poecilia formosa ENSPFOG00000015360 I 0.000
ENSPFOG00000001513 Poecilia formosa ENSPFOG00000001513 I 0.000
Pvit_12574 Pogona vitticeps Pvit_12574 I 0.000
ENSPPYG00000004196 Pongo abelii ENSPPYG00000004196 I 0.000
ZNF384 Procavia capensis ENSPCAG00000012951 I 0.000
ZNF384 Pteropus vampyrus ENSPVAG00000011440 I 0.000
Zfp384 Rattus norvegicus ENSRNOG00000017066 I 0.000
ENSSHAG00000015330 Sarcophilus harrisii ENSSHAG00000015330 I 0.000
ZNF384 Sus scrofa ENSSSCG00000000702 I 0.000
ZNF384 Tursiops truncatus ENSTTRG00000011754 I 0.000
ENSXMAG00000016787 Xiphophorus maculatus ENSXMAG00000016787 I 0.000