Alligator_sinensis_CCG002534.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG002534.1 T133002_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF384
M04451_2.00 		Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA
TTTTBNNNNNNNNNNNNVAAAA		 SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX 		0.807 0.940
ZNF384
M08306_2.00 		Homo sapiens
CTTTTTTTT
AAAAAAAAG		 ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE 		0.807 0.940
ZNF384
M08090_2.00 		Homo sapiens
WTTTTTTTNHNN
NNDNAAAAAAAW		 ChIP-seq
Mathelier et al.(2014)
MA1125.1 		0.807 0.940
ZNF384
M08888_2.00 		Homo sapiens
BVNNBTTTTTSC
GSAAAAAVNNBV		 Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C 		0.807 0.940
ZNF384
M10209_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CIZ_01 		0.807 0.940
ZNF384
M04452_2.00 		Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV
BTTTYHNNNNNNNNNNDRAAAM		 SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX 		0.807 0.940
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002534.1 C2H2 ZF 212 234
Alligator_sinensis_CCG002534.1 C2H2 ZF 240 262
Alligator_sinensis_CCG002534.1 C2H2 ZF 268 290
Alligator_sinensis_CCG002534.1 C2H2 ZF 301 323
Alligator_sinensis_CCG002534.1 C2H2 ZF 329 351
Alligator_sinensis_CCG002534.1 C2H2 ZF 357 381
Alligator_sinensis_CCG002534.1 C2H2 ZF 387 409
Alligator_sinensis_CCG002534.1 C2H2 ZF 417 439

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10003951 Chelonia mydas Cmyd_10003951 I 0.827
ENSFALG00000004741 Ficedula albicollis ENSFALG00000004741 I 0.821
ZNF384 Monodelphis domestica ENSMODG00000018105 I 0.810
ENSSHAG00000015330 Sarcophilus harrisii ENSSHAG00000015330 I 0.810
ENSAMEG00000014121 Ailuropoda melanoleuca ENSAMEG00000014121 I 0.807
ZNF384 Canis familiaris ENSCAFG00000014740 I 0.807
ZNF384 Callithrix jacchus ENSCJAG00000007944 I 0.807
ENSCSAG00000010379 Chlorocebus sabaeus ENSCSAG00000010379 I 0.807
ZNF384 Felis catus ENSFCAG00000006882 I 0.807
ZNF384 Homo sapiens ENSG00000126746 D 0.807
ZNF384 Gorilla gorilla ENSGGOG00000016048 I 0.807
ZNF384 Loxodonta africana ENSLAFG00000008381 I 0.807
ZNF384 Macaca mulatta ENSMMUG00000016990 I 0.807
ENSMPUG00000016838 Mustela putorius furo ENSMPUG00000016838 I 0.807
ENSNLEG00000004506 Nomascus leucogenys ENSNLEG00000004506 I 0.807
ZNF384 Oryctolagus cuniculus ENSOCUG00000003747 I 0.807
ZNF384 Otolemur garnettii ENSOGAG00000010052 I 0.807
ZNF384 Ochotona princeps ENSOPRG00000003626 I 0.807
ENSPANG00000014845 Papio anubis ENSPANG00000014845 I 0.807
ZNF384 Procavia capensis ENSPCAG00000012951 I 0.807
ENSPPYG00000004196 Pongo abelii ENSPPYG00000004196 I 0.807
ZNF384 Pan troglodytes ENSPTRG00000004584 I 0.807
ZNF384 Sus scrofa ENSSSCG00000000702 I 0.807
ENSSTOG00000009902 Ictidomys tridecemlineatus ENSSTOG00000009902 I 0.807
ZNF384 Myotis lucifugus ENSMLUG00000013771 I 0.806
Myotis_brandtii_ZNF384_10009390 Myotis brandtii Myotis_brandtii_ZNF384_10009390 I 0.806
ZNF384 Choloepus hoffmanni ENSCHOG00000006697 I 0.805
ZNF384 Erinaceus europaeus ENSEEUG00000012950 I 0.800
ZNF384 Pteropus vampyrus ENSPVAG00000011440 I 0.796
Zfp384 Mus musculus ENSMUSG00000038346 I 0.790
Zfp384 Rattus norvegicus ENSRNOG00000017066 I 0.790
ZNF384 Anolis carolinensis ENSACAG00000006099 I 0.785
Ogr12333 Ophisaurus gracilis Ogr12333 I 0.785
Pvit_12574 Pogona vitticeps Pvit_12574 I 0.785
ZNF384 Bos taurus ENSBTAG00000017072 I 0.779
ZNF384 Dasypus novemcinctus ENSDNOG00000003936 I 0.779
ZNF384 Equus caballus ENSECAG00000009490 I 0.779
ZNF384 Tursiops truncatus ENSTTRG00000011754 I 0.779
ENSBTAP00000022702-D1 Bos grunniens ENSBTAP00000022702-D1 I 0.779
ENSP00000380019 Macaca fascicularis ENSP00000380019 I 0.779
ENSPFOG00000015360 Poecilia formosa ENSPFOG00000015360 I 0.767
ENSXMAG00000011034 Xiphophorus maculatus ENSXMAG00000011034 N 0.766
ENSLOCG00000007968 Lepisosteus oculatus ENSLOCG00000007968 I 0.764
ENSAMXG00000014229 Astyanax mexicanus ENSAMXG00000014229 I 0.761
ENSONIG00000013041 Oreochromis niloticus ENSONIG00000013041 I 0.761
znf384l Gasterosteus aculeatus ENSGACG00000001879 N 0.760
znf384l Oryzias latipes ENSORLG00000006888 N 0.757
znf384l Tetraodon nigroviridis ENSTNIG00000000726 N 0.757
znf384l Takifugu rubripes ENSTRUG00000004550 N 0.757
ENSONIG00000004947 Oreochromis niloticus ENSONIG00000004947 N 0.756