KDM2B (Cavia porcellus)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02008 (zf-CXXC) IPR002857 ENSCPOG00000011011 T167892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000009897 CxxC 576 622

Links

Other CxxC family TFs
Other Cavia porcellus TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22212 Aegilops tauschii F775_22212 I
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I
MYB98 Arabidopsis lyrata scaffold_702543.1 I
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I
MYB98 Arabidopsis thaliana AT4G18770 D
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I
Bo3g018490 Brassica oleracea Bo3g018490 I
Bo1g019910 Brassica oleracea Bo1g019910 I
Bo2g028290 Brassica oleracea Bo2g028290 I
Bo3g157300 Brassica oleracea Bo3g157300 I
Bo7g106240 Brassica oleracea Bo7g106240 I
Bra012579 Brassica rapa Bra012579 I
Bra020346 Brassica rapa Bra020346 I
Bra006744 Brassica rapa Bra006744 I
Bra013346 Brassica rapa Bra013346 I
Bra020992 Brassica rapa Bra020992 I
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I
Carubv10028458m.g Capsella rubella Carubv10028458m.g I
Carubv10006734m.g Capsella rubella Carubv10006734m.g I
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I
Ca_17294 Cicer arietinum Ca_17294 I
Ca_17087 Cicer arietinum Ca_17087 I
Ca_07482 Cicer arietinum Ca_07482 I
Cla019490 Citrullus lanatus Cla019490 I
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I
Cucsa.196850 Cucumis sativus Cucsa.196850 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
GLYMA06G19280 Glycine max GLYMA06G19280 I
GLYMA05G02300 Glycine max GLYMA05G02300 I
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I
LPERR12G04190 Leersia perrieri LPERR12G04190 I
LPERR06G03780 Leersia perrieri LPERR06G03780 I
Lus10042111.g Linum usitatissimum Lus10042111.g I
Lus10039966.g Linum usitatissimum Lus10039966.g I
Lus10027695.g Linum usitatissimum Lus10027695.g I
Lus10002384.g Linum usitatissimum Lus10002384.g I
MDP0000319656 Malus domestica MDP0000319656 I
MDP0000215359 Malus domestica MDP0000215359 I
cassava9008.m1 Manihot esculenta cassava9008.m1 I
cassava33974.m1 Manihot esculenta cassava33974.m1 I
cassava19706.m1 Manihot esculenta cassava19706.m1 I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
MTR_5g049190 Medicago truncatula MTR_5g049190 I
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I
OBART12G04500 Oryza barthii OBART12G04500 I
OBART12G04480 Oryza barthii OBART12G04480 I
OBART06G04170 Oryza barthii OBART06G04170 I
OB06G13860 Oryza brachyantha OB06G13860 I
OB12G14410 Oryza brachyantha OB12G14410 I
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I
BGIOSGA036541 Oryza indica BGIOSGA036541 I
BGIOSGA022369 Oryza indica BGIOSGA022369 I
OLONG_008158 Oryza longistaminata OLONG_008158 I
OLONG_010000 Oryza longistaminata OLONG_010000 I
OMERI06G04840 Oryza meridionalis OMERI06G04840 I
ONIVA06G05390 Oryza nivara ONIVA06G05390 I
ONIVA12G04220 Oryza nivara ONIVA12G04220 I
OPUNC06G03990 Oryza punctata OPUNC06G03990 I
OPUNC12G04510 Oryza punctata OPUNC12G04510 I
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I
OS06G0162700 Oryza sativa OS06G0162700 I
Pavir.J37434 Panicum virgatum Pavir.J37434 I
Pavir.J25000 Panicum virgatum Pavir.J25000 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I
Pm000541 Prunus mume Pm000541 I
Pm024743 Prunus mume Pm024743 I
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
29917.m001977 Ricinus communis 29917.m001977 I
30147.m013937 Ricinus communis 30147.m013937 I
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I
Si039046m.g Setaria italica Si039046m.g I
Sb01g005100 Sorghum bicolor Sb01g005100 I
TCM_012087 Theobroma cacao TCM_012087 I
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I
TRIUR3_12421 Triticum urartu TRIUR3_12421 I
MYB98 Vitis vinifera VIT_17s0000g08550 I
GRMZM5G870592 Zea mays GRMZM5G870592 I
GRMZM2G302549 Zea mays GRMZM2G302549 I