CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

dmd-3 *(Caenorhabditis elegans)* DM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00751 (DM)	IPR001275	WBGene00012832	T169436_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
dmd-3 M00658_2.00	Caenorhabditis elegans	NNWGTWDN	NHWACWNN	PBM Narasimhan et al.(2015) pTH10638	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CBG09413 M01924_2.00	Caenorhabditis briggsae	AATGTTTC	GAAACATT	PBM Weirauch et al.(2014) pTH8330	0.918	0.745
WUBG_11979 M01922_2.00	Wuchereria bancrofti	ATGTWTCA	TGAWACAT	PBM Weirauch et al.(2014) pTH9296	0.917	0.766
Bm2567 M01923_2.00	Brugia malayi	NNNWGTTKHN	NDMAACWNNN	PBM Weirauch et al.(2014) pTH9246	0.914	0.766
dmd-10 M00657_2.00	Caenorhabditis elegans	AWTGTTTC	GAAACAWT	PBM Narasimhan et al.(2015) pTH9142	0.914	0.745
CBN06605 M01925_2.00	Caenorhabditis brenneri	NWGTWKN	NMWACWN	PBM Weirauch et al.(2014) pTH9247	0.909	0.745
CJA05633_CONSTRUCT M01936_2.00	PBM CONSTRUCTS	NWGTWDN	NHWACWN	PBM Weirauch et al.(2014) pTH9344	0.909	0.745
For this family, TFs with SR scores > 0.845* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00658_2.00	DM	19	65	RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Y43F8C.10a	DM	15	60	RVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQLNSR
Y43F8C.10a	DM	113	159	RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ
Y43F8C.10b	DM	19	65	RRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQ

Links
Other DM family TFs
Other *Caenorhabditis elegans* TFs