CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OS01G0673700 *(Oryza sativa)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02701 (zf-Dof)	IPR003851	OS01G0673700	T170926_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.661	0.661
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.661	0.661
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.661	0.661
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.661	0.661
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.644	0.644
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.644	0.644
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.644	0.644
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.627	0.627
DOF1.6 M06831_2.00	Arabidopsis thaliana	HYACTTTWNNN	NNNWAAAGTRD	Dap-seq OMalley et al.(2016) AT1G47655_col_a	0.627	0.627
DOF1.6 M06832_2.00	Arabidopsis thaliana	YYYTTDNCTTTWYBN	NVRWAAAGNHAARRR	Dap-seq OMalley et al.(2016) AT1G47655_colamp_a	0.627	0.627
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.610	0.610
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.610	0.610
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.610	0.610
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.610	0.610
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.610	0.610
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.610	0.610
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.610	0.610
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.610	0.610
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.610	0.610
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.610	0.610
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.610	0.610
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.610	0.610
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.610	0.610
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.610	0.610
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.610	0.610
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.610	0.610
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.593	0.593
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.593	0.593
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.593	0.593
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.593	0.593
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.593	0.593
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.593	0.593
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.593	0.593
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.593	0.593
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.593	0.593
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.593	0.593
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.576	0.576
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.576	0.576
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.576	0.576
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.576	0.576
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.576	0.576
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.576	0.576
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.576	0.576
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.576	0.576
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.576	0.576
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.576	0.576
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.559	0.559
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.559	0.559
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.559	0.559
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.559	0.559
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.559	0.559
DOF5.8 M06868_2.00	Arabidopsis thaliana	HHNHHYHHHHYTTTHNCTTTTKNNHHNHW	WDNDDNNMAAAAGNDAAARDDDDRDDNDD	Dap-seq OMalley et al.(2016) AT5G66940_col_a	0.559	0.559
DOF5.8 M06869_2.00	Arabidopsis thaliana	NNHNDYWRCTTTTTNNHYHNH	DNDRDNNAAAAAGYWRHNDNN	Dap-seq OMalley et al.(2016) AT5G66940_colamp_a	0.559	0.559
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.542	0.542
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.542	0.542
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.542	0.542
DOF4.7 M01945_2.00	Arabidopsis thaliana	NCKTTHNNN	NNNDAAMGN	PBM Weirauch et al.(2014) pTH7189	0.542	0.542
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.542	0.542
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.542	0.542
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.542	0.542
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.542	0.542
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.542	0.542
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.542	0.542
DOF4.7 M06861_2.00	Arabidopsis thaliana	HHHHYHHHNHHHHHHHWWTWWCTTTTTN	NAAAAAGWWAWWDDDDDDDNDDDRDDDD	Dap-seq OMalley et al.(2016) At4g38000_col_a	0.542	0.542
DOF4.7 M06862_2.00	Arabidopsis thaliana	NYWACTTTWTB	VAWAAAGTWRN	Dap-seq OMalley et al.(2016) At4g38000_colamp_a	0.542	0.542
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.542	0.542
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.542	0.542
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.542	0.542
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.542	0.542
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.542	0.542
DOF3.2 M01943_2.00	Arabidopsis thaliana	NHDNNNNN	NNNNNHDN	PBM Weirauch et al.(2014) pTH7183	0.525	0.525
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.525	0.525
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.525	0.525
DOF3.2 M06847_2.00	Arabidopsis thaliana	NYHVCTTTTTNNHHTHHNN	NNDDADDNNAAAAAGBDRN	Dap-seq OMalley et al.(2016) At3g45610_col_a	0.525	0.525
DOF3.2 M06848_2.00	Arabidopsis thaliana	NNHDDYHVCTTTTTB	VAAAAAGBDRHHDNN	Dap-seq OMalley et al.(2016) At3g45610_colamp_a	0.525	0.525
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.525	0.525
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.525	0.525
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.508	0.508
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.508	0.508
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.508	0.508
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.508	0.508
DOF4.5 M06859_2.00	Arabidopsis thaliana	AAAKYHDCTTTWTN	NAWAAAGHDRMTTT	Dap-seq OMalley et al.(2016) dof45_col_a	0.508	0.508
DOF4.5 M06860_2.00	Arabidopsis thaliana	WAAAGYYDCTTTWDN	NHWAAAGHRRCTTTW	Dap-seq OMalley et al.(2016) dof45_colamp_a	0.508	0.508
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OS01T0673700-00	Dof	81	140	GEPLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASPGRRRPRPS

Links
Other Dof family TFs
Other *Oryza sativa* TFs

1889 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_15555	Aegilops tauschii	F775_15555	N	0.000
F775_18203	Aegilops tauschii	F775_18203	I	0.000
Aquca_026_00367	Aquilegia coerulea	Aquca_026_00367	I	0.000
FEZ	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_1002274	I	0.000
BRADI1G06970	Brachypodium distachyon	BRADI1G06970	I	0.000
PK18158.1	Cannabis sativa	PK18158.1	I	0.000
Ciclev10005465m.g	Citrus clementina	Ciclev10005465m.g	I	0.000
Ciclev10006695m.g	Citrus clementina	Ciclev10006695m.g	I	0.000
Ciclev10011891m.g	Citrus clementina	Ciclev10011891m.g	I	0.000
Ciclev10032203m.g	Citrus clementina	Ciclev10032203m.g	I	0.000
orange1.1g046948m.g	Citrus sinensis	orange1.1g046948m.g	I	0.000
orange1.1g021785m.g	Citrus sinensis	orange1.1g021785m.g	I	0.000
gene20078-v1.0-hybrid	Fragaria vesca	gene20078-v1.0-hybrid	N	0.000
gene30051-v1.0-hybrid	Fragaria vesca	gene30051-v1.0-hybrid	N	0.000
GLYMA15G40950	Glycine max	GLYMA15G40950	I	0.000
Gorai.004G270300	Gossypium raimondii	Gorai.004G270300	I	0.000
Gorai.001G091900	Gossypium raimondii	Gorai.001G091900	I	0.000
Gorai.004G270400	Gossypium raimondii	Gorai.004G270400	I	0.000
Gorai.009G357700	Gossypium raimondii	Gorai.009G357700	I	0.000
MLOC_66348	Hordeum vulgare	MLOC_66348	N	0.000
MLOC_4952	Hordeum vulgare	MLOC_4952	N	0.000
LPERR03G30390	Leersia perrieri	LPERR03G30390	I	0.000
chr2.LjT04L10.100.nc	Lotus japonicus	chr2.LjT04L10.100.nc	I	0.000
MDP0000428265	Malus domestica	MDP0000428265	I	0.000
MDP0000241821	Malus domestica	MDP0000241821	I	0.000
MDP0000186765	Malus domestica	MDP0000186765	I	0.000
cassava34069.m1	Manihot esculenta	cassava34069.m1	I	0.000
cassava21730.m1	Manihot esculenta	cassava21730.m1	I	0.000
cassava20477.m1	Manihot esculenta	cassava20477.m1	I	0.000
mgf023960m	Mimulus guttatus	mgf023960m	I	0.000
mgf019629m	Mimulus guttatus	mgf019629m	N	0.000
GSMUA_Achr5G02170_001	Musa acuminata	GSMUA_Achr5G02170_001	I	0.000
OBART03G36060	Oryza barthii	OBART03G36060	I	0.000
OB03G42970	Oryza brachyantha	OB03G42970	I	0.000
ORGLA03G0330500	Oryza glaberrima	ORGLA03G0330500	I	0.000
OGLUM03G35790	Oryza glumaepatula	OGLUM03G35790	I	0.000
BGIOSGA013656	Oryza indica	BGIOSGA013656	I	0.000
OMERI03G33230	Oryza meridionalis	OMERI03G33230	I	0.000
ONIVA10G12510	Oryza nivara	ONIVA10G12510	I	0.000
OPUNC03G33030	Oryza punctata	OPUNC03G33030	I	0.000
ORUFI03G37500	Oryza rufipogon	ORUFI03G37500	I	0.000
OS03G0777000	Oryza sativa	OS03G0777000	I	0.000
Pavir.J26531	Panicum virgatum	Pavir.J26531	I	0.000
Pavir.J03639	Panicum virgatum	Pavir.J03639	I	0.000
POPTR_0007s08340	Populus trichocarpa	POPTR_0007s08340	I	0.000
POPTR_0017s11830	Populus trichocarpa	POPTR_0017s11830	I	0.000
POPTR_0004s12850	Populus trichocarpa	POPTR_0004s12850	I	0.000
Pm006506	Prunus mume	Pm006506	I	0.000
Pm010673	Prunus mume	Pm010673	N	0.000
Pm014764	Prunus mume	Pm014764	I	0.000
Pm011037	Prunus mume	Pm011037	I	0.000
PRUPE_ppa026843mg	Prunus persica	PRUPE_ppa026843mg	I	0.000
PRUPE_ppa025263mg	Prunus persica	PRUPE_ppa025263mg	N	0.000
PRUPE_ppa022278mg	Prunus persica	PRUPE_ppa022278mg	I	0.000
PRUPE_ppa022043mg	Prunus persica	PRUPE_ppa022043mg	I	0.000
30169.m006343	Ricinus communis	30169.m006343	I	0.000
SapurV1A.0085s0430	Salix purpurea	SapurV1A.0085s0430	I	0.000
Si030477m.g	Setaria italica	Si030477m.g	N	0.000
Solyc07g045030.2	Solanum lycopersicum	Solyc07g045030.2	I	0.000
PGSC0003DMG400031266	Solanum tuberosum	PGSC0003DMG400031266	I	0.000
Sb02g002620	Sorghum bicolor	Sb02g002620	N	0.000
Sb01g006410	Sorghum bicolor	Sb01g006410	I	0.000
TCM_032393	Theobroma cacao	TCM_032393	I	0.000
Traes_5DL_0924913F8	Triticum aestivum	Traes_5DL_0924913F8	I	0.000
Traes_5BL_39FF03C5D	Triticum aestivum	Traes_5BL_39FF03C5D	I	0.000
Traes_5BL_3900B9128	Triticum aestivum	Traes_5BL_3900B9128	I	0.000
VIT_19s0027g00870	Vitis vinifera	VIT_19s0027g00870	I	0.000
GRMZM2G479980	Zea mays	GRMZM2G479980	N	0.000
GRMZM2G112548	Zea mays	GRMZM2G112548	I	0.000

OS01G0673700 (Oryza sativa) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1889 Related TFs

OS01G0673700 **(Oryza sativa)
Dof**