nLs.2.1.2.g08363 (Litomosoides sigmodontis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) nLs.2.1.2.g08363 T174947_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.749 0.749
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.744 0.744
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.744 0.744
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.744 0.744
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.740 0.740
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.736 0.736
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.736 0.736
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t08363-RA EBF1 27 253

Links

Other EBF1 family TFs
Other Litomosoides sigmodontis TFs

268 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
GTF2I Callithrix jacchus ENSCJAG00000016182 I
Aan_R007260 Calypte anna Aan_R007260 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
GTF2I Equus caballus ENSECAG00000020289 I
GTF2I Felis catus ENSFCAG00000002617 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
GTF2I Gallus gallus ENSGALG00000021665 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
GTF2I Homo sapiens ENSG00000263001 D
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I
Gtf2i Mus musculus ENSMUSG00000060261 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Sus scrofa ENSSSCG00000007721 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
Tal_R004165 Tyto alba Tal_R004165 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
XP_002932326 Xenopus tropicalis XP_002932326 I