Gorai.005G134200 (Gossypium raimondii)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Gorai.005G134200 T181495_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.911 0.911
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.911 0.911
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.700 0.700
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G134200.10 FAR1 84 186
Gorai.005G134200.11 FAR1 84 186
Gorai.005G134200.1 FAR1 84 186
Gorai.005G134200.2 FAR1 84 186
Gorai.005G134200.3 FAR1 84 186
Gorai.005G134200.4 FAR1 84 186
Gorai.005G134200.5 FAR1 84 186
Gorai.005G134200.6 FAR1 84 186
Gorai.005G134200.7 FAR1 84 186
Gorai.005G134200.8 FAR1 84 186
Gorai.005G134200.9 FAR1 84 186

Links

Other FAR1 family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M438DRAFT_28326 Aureobasidium pullulans M438DRAFT_28326 N
A1O3_07332 Capronia epimyces A1O3_07332 N
CFIO01_12411 Colletotrichum fioriniae CFIO01_12411 N
GLRG_10663 Colletotrichum graminicola GLRG_10663 N
Cob_02678 Colletotrichum orbiculare Cob_02678 N
CSUB01_10338 Colletotrichum sublineola CSUB01_10338 N
MAC_08477 Metarhizium acridum MAC_08477 N
MANI_000800 Metarhizium anisopliae MANI_000800 N
MBR_06946 Metarhizium brunneum MBR_06946 N
MGU_05359 Metarhizium guizhouense MGU_05359 N
MAJ_03455 Metarhizium majus MAJ_03455 N
X797_008492 Metarhizium robertsii X797_008492 N