Bra039614 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra039614 T191990_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.867 1.000
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.867 1.000
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.825 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039614.1-P GATA 30 65

Links

Other GATA family TFs
Other Brassica rapa TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00859 Aegilops tauschii F775_00859 I 0.812
F775_42893 Aegilops tauschii F775_42893 I 0.820
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.812
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.812
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.812
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.867
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.825
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.825
GATA20 Arabidopsis thaliana AT2G18380 D 0.867
GATA18 Arabidopsis thaliana AT3G50870 I 0.825
GATA19 Arabidopsis thaliana AT4G36620 D 0.825
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.867
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.825
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.825
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.820
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.812
Bo1g005530 Brassica oleracea Bo1g005530 I 0.825
Bo7g010220 Brassica oleracea Bo7g010220 I 0.836
Bo7g064860 Brassica oleracea Bo7g064860 I 0.825
Bo7g100580 Brassica oleracea Bo7g100580 I 0.825
Bo7g118030 Brassica oleracea Bo7g118030 I 0.825
Bo8g080330 Brassica oleracea Bo8g080330 I 0.825
Bo9g026020 Brassica oleracea Bo9g026020 I 0.862
Bra010563 Brassica rapa Bra010563 I 0.820
Bra011695 Brassica rapa Bra011695 I 0.825
Bra012080 Brassica rapa Bra012080 I 0.825
Bra012883 Brassica rapa Bra012883 I 0.825
Bra017766 Brassica rapa Bra017766 I 0.825
Bra036854 Brassica rapa Bra036854 I 0.825
Bra037221 Brassica rapa Bra037221 I 0.867
PK24471.1 Cannabis sativa PK24471.1 I 0.825
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.825
Cagra.12434s0001 Capsella grandiflora Cagra.12434s0001 I 0.450
Cagra.7149s0001 Capsella grandiflora Cagra.7149s0001 I 0.593
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.825
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.867
Carubv10017765m.g Capsella rubella Carubv10017765m.g I 0.825
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.825
Ca_02038 Cicer arietinum Ca_02038 I 0.825
Ca_16057 Cicer arietinum Ca_16057 I 0.812
Cla014435 Citrullus lanatus Cla014435 I 0.812
Cla014810 Citrullus lanatus Cla014810 I 0.825
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.825
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.825
Cucsa.127470 Cucumis sativus Cucsa.127470 I 0.812
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.825
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.867
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.825
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.825
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.824
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.825
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.825
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.825
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.825
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.825
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.825
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.812
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.820
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.812
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.812
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.807
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.825
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.825
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.825
MDP0000253174 Malus domestica MDP0000253174 I 0.825
MDP0000310271 Malus domestica MDP0000310271 I 0.825
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.825
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.825
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.825
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.838
mgf023982m Mimulus guttatus mgf023982m I 0.825
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.806
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.812
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.812
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.812
OBART01G25510 Oryza barthii OBART01G25510 I 0.812
OBART05G26150 Oryza barthii OBART05G26150 I 0.802
OB01G34710 Oryza brachyantha OB01G34710 I 0.812
OB05G34480 Oryza brachyantha OB05G34480 I 0.812
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.812
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.807
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.807
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.812
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.802
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.807
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.812
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.807
GATA15 Oryza indica BGIOSGA020424 I 0.807
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.812
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.807
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.807
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.812
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.807
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.812
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.812
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.807
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.812
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.807
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.807
OS01G0662800 Oryza sativa OS01G0662800 I 0.812
OS05G0567900 Oryza sativa OS05G0567900 I 0.807
GATA15 Oryza sativa OS05G0578900 I 0.807
Pavir.Ca00998 Panicum virgatum Pavir.Ca00998 I 0.820
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.820
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.825
Pavir.J03293 Panicum virgatum Pavir.J03293 I 0.812
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.820
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.812
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.825
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.825
Pm026628 Prunus mume Pm026628 I 0.825
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.825
29634.m002146 Ricinus communis 29634.m002146 I 0.825
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.825
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.825
Si022366m.g Setaria italica Si022366m.g I 0.820
Si024214m.g Setaria italica Si024214m.g I 0.812
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.825
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.825
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.825
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.825
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.812
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.807
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.820
TCM_000376 Theobroma cacao TCM_000376 I 0.825
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.820
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.812
MNP Vitis vinifera VIT_04s0023g01840 I 0.825
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.812
GRMZM2G397616 Zea mays GRMZM2G397616 I 0.829