Cagra.12434s0001 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.12434s0001 T196423_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.450 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.450 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.450 1.000
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.450 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12434s0001.1.p GATA 1 16

Links

Other GATA family TFs
Other Capsella grandiflora TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.867
GRMZM5G887975 Zea mays GRMZM5G887975 N 0.842
AMTR_s00002p00254680 Amborella trichopoda AMTR_s00002p00254680 N 0.825
Traes_4AL_4108A9D5E Triticum aestivum Traes_4AL_4108A9D5E N 0.825
TRIUR3_07191 Triticum urartu TRIUR3_07191 N 0.825
Pavir.J34225 Panicum virgatum Pavir.J34225 N 0.825
GSMUA_Achr2G15750_001 Musa acuminata GSMUA_Achr2G15750_001 N 0.814
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.450
GATA20 Arabidopsis thaliana AT2G18380 D 0.450
Bo1g005530 Brassica oleracea Bo1g005530 I 0.450
Bo7g010220 Brassica oleracea Bo7g010220 I 0.450
Bo7g064860 Brassica oleracea Bo7g064860 I 0.450
Bra011695 Brassica rapa Bra011695 I 0.450
Bra012080 Brassica rapa Bra012080 I 0.450
Bra037221 Brassica rapa Bra037221 I 0.450
Bra039614 Brassica rapa Bra039614 I 0.450
F775_42893 Aegilops tauschii F775_42893 I 0.450
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.450
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.450
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.450
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.450
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.450
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.450
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.450