Carubv10014541m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10014541m.g T196457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.867 1.000
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.867 1.000
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.825 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014541m GATA 117 152

Links

Other GATA family TFs
Other Capsella rubella TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00859 Aegilops tauschii F775_00859 I 0.812
F775_42893 Aegilops tauschii F775_42893 I 0.820
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.812
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.812
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.812
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.867
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.825
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.825
GATA20 Arabidopsis thaliana AT2G18380 D 0.867
GATA18 Arabidopsis thaliana AT3G50870 I 0.825
GATA19 Arabidopsis thaliana AT4G36620 D 0.825
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.867
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.825
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.825
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.820
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.812
Bo1g005530 Brassica oleracea Bo1g005530 I 0.825
Bo7g010220 Brassica oleracea Bo7g010220 I 0.836
Bo7g064860 Brassica oleracea Bo7g064860 I 0.825
Bo7g100580 Brassica oleracea Bo7g100580 I 0.825
Bo7g118030 Brassica oleracea Bo7g118030 I 0.825
Bo8g080330 Brassica oleracea Bo8g080330 I 0.825
Bo9g026020 Brassica oleracea Bo9g026020 I 0.862
Bra010563 Brassica rapa Bra010563 I 0.820
Bra011695 Brassica rapa Bra011695 I 0.825
Bra012080 Brassica rapa Bra012080 I 0.825
Bra012883 Brassica rapa Bra012883 I 0.825
Bra017766 Brassica rapa Bra017766 I 0.825
Bra036854 Brassica rapa Bra036854 I 0.825
Bra037221 Brassica rapa Bra037221 I 0.867
Bra039614 Brassica rapa Bra039614 I 0.867
PK24471.1 Cannabis sativa PK24471.1 I 0.825
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.825
Cagra.12434s0001 Capsella grandiflora Cagra.12434s0001 I 0.450
Cagra.7149s0001 Capsella grandiflora Cagra.7149s0001 I 0.593
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.825
Carubv10017765m.g Capsella rubella Carubv10017765m.g I 0.825
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.825
Ca_02038 Cicer arietinum Ca_02038 I 0.825
Ca_16057 Cicer arietinum Ca_16057 I 0.812
Cla014435 Citrullus lanatus Cla014435 I 0.812
Cla014810 Citrullus lanatus Cla014810 I 0.825
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.825
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.825
Cucsa.127470 Cucumis sativus Cucsa.127470 I 0.812
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.825
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.867
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.825
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.825
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.824
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.825
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.825
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.825
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.825
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.825
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.825
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.812
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.820
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.812
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.812
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.807
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.825
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.825
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.825
MDP0000253174 Malus domestica MDP0000253174 I 0.825
MDP0000310271 Malus domestica MDP0000310271 I 0.825
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.825
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.825
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.825
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.838
mgf023982m Mimulus guttatus mgf023982m I 0.825
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.806
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.812
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.812
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.812
OBART01G25510 Oryza barthii OBART01G25510 I 0.812
OBART05G26150 Oryza barthii OBART05G26150 I 0.802
OB01G34710 Oryza brachyantha OB01G34710 I 0.812
OB05G34480 Oryza brachyantha OB05G34480 I 0.812
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.812
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.807
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.807
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.812
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.802
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.807
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.812
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.807
GATA15 Oryza indica BGIOSGA020424 I 0.807
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.812
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.807
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.807
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.812
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.807
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.812
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.812
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.807
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.812
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.807
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.807
OS01G0662800 Oryza sativa OS01G0662800 I 0.812
OS05G0567900 Oryza sativa OS05G0567900 I 0.807
GATA15 Oryza sativa OS05G0578900 I 0.807
Pavir.Ca00998 Panicum virgatum Pavir.Ca00998 I 0.820
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.820
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.825
Pavir.J03293 Panicum virgatum Pavir.J03293 I 0.812
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.820
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.812
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.825
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.825
Pm026628 Prunus mume Pm026628 I 0.825
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.825
29634.m002146 Ricinus communis 29634.m002146 I 0.825
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.825
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.825
Si022366m.g Setaria italica Si022366m.g I 0.820
Si024214m.g Setaria italica Si024214m.g I 0.812
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.825
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.825
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.825
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.825
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.812
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.807
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.820
TCM_000376 Theobroma cacao TCM_000376 I 0.825
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.820
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.812
MNP Vitis vinifera VIT_04s0023g01840 I 0.825
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.812
GRMZM2G397616 Zea mays GRMZM2G397616 I 0.829