CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_kg.205__1__AT5G52510.1
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
fgenesh2_kg.205__1__AT5G52510.1
T200121_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.205__1__AT5G52510.1
GRAS
191
571
SRQTVMEIATAIAEGKTEIATEILARVSQTPNLERSSEEKLVDFMVTALRSRINPAESLASPATELYGKEHLISTQLLNELSPCYKLGFTAANLAILNAAGNNDAGMMMLHVIDFDIGEGGQYVNLLQTLSTRRNGKNQNQNSPVVKITAVTNNVYGFLVDGGGEERLKVVGDLLSQLGNRLGISVSFNVVASLRLGDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSLNSDRVKVEEGIGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIADRLNNGNLAHPGFTVKEDNGGVCFGWMGRTLAVASAWR
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.8__1135__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.8__1135__AT5G52510.1
N
0.986
SCL8
Arabidopsis thaliana
AT5G52510
N
0.874
Bostr.7305s0021
Boechera stricta
Bostr.7305s0021
N
0.860
Bo2g047700
Brassica oleracea
Bo2g047700
N
0.816
Bo9g083130
Brassica oleracea
Bo9g083130
N
0.822
Bra022596
Brassica rapa
Bra022596
N
0.805
Bra028312
Brassica rapa
Bra028312
N
0.805
Cagra.4170s0002
Capsella grandiflora
Cagra.4170s0002
N
0.874
Carubv10026035m.g
Capsella rubella
Carubv10026035m.g
N
0.874
Thhalv10012936m.g
Eutrema salsugineum
Thhalv10012936m.g
N
0.879