CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10011270m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10011270m.g
T202352_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011270m
GRAS
43
447
LRRLLFTAADFVSQSNFTAARNLLSILSLNSSPYGDSTQRLAHLFTKALSLRINRLQQEQDPTVATCTTNEMTMSTNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSSPNSPPPSLRITGCGRDVTGLNRTGDRLTRFANSLGLQFQFHKLVIVDEDLPGLLLQIRLLALSAVQGETIAVNCVHFLYKFFNDDADLIGHFLTVIKSLNPRIVTMAEREANHGDHSFLIRFSEALDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIMDVVAAEATERKQRHRRFEIWGEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNDSLFLGWQNRLLFSVSSWK
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LAS
Arabidopsis lyrata
scaffold_105352.1
N
0.864
SCL18
Arabidopsis thaliana
AT1G55580
N
0.899
Bostr.6758s0017
Boechera stricta
Bostr.6758s0017
N
0.924
Bo6g034670
Brassica oleracea
Bo6g034670
N
0.865
Bra038002
Brassica rapa
Bra038002
N
0.850
Cagra.0001s0019
Capsella grandiflora
Cagra.0001s0019
N
0.995
Thhalv10011480m.g
Eutrema salsugineum
Thhalv10011480m.g
N
0.888